PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g51320.1
Common NameOSJNBa0041A02.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 278aa    MW: 32270.1 Da    PI: 7.4606
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g51320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.79.7e-2621106186
          trihelix   1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W  qe+++Li+ar eme+++ ++    +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  LOC_Os04g51320.1  21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106
                       7********************975223369*************************************99999974....678******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00471884IPR001005SANT/Myb domain
CDDcd122031.61E-162089No hitNo description
PfamPF138372.9E-2221107No hitNo description
PROSITE profilePS500907.2822282IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA  60
RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL  120
LESESGPSVK KKLKRPSGDL SSEDSDDEED GSGDSGDEKP IRSRKRKIAD KRQQSQRMAE  180
KSRTSISSIH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE  240
HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.279460.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329909290.0
Expression AtlasQ7XTQ6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g51320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g51320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-137hypothetical protein SORBIDRAFT_06g027540
TrEMBLQ7XTQ60.0Q7XTQ6_ORYSJ;
STRINGLOC_Os04g51320.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-28Trihelix family protein