PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g48070.1
Common NameGL2-4, LOC4336705, Os04g0569100, OSJNBb0032E06.7, ROC4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 814aa    MW: 86758 Da    PI: 5.7216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g48070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.91.5e-22105160156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
  LOC_Os04g48070.1 105 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 160
                       688999***********************************************998 PP

2START1525.1e-483165562206
                       HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S... CS
             START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla... 77 
                       la +a++elvk+a+ ++p+W   +        es+n +e+l +f++  +     + +ea+r+sg+v+ +  a lve+l+d + +W+ ++    
  LOC_Os04g48070.1 316 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDER-RWSDMFScmi 407
                       67899***************9766667999****************9999**************998651558*********.********** PP

                       .EEEEEEEECTT.............EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSE CS
             START  78 .kaetlevissg.............galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpS 150
                        ka+t+e is+g              +  +m+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+    +      s   + +++lpS
  LOC_Os04g48070.1 408 aKASTTEEISTGvagsrngalllvsDEHSVMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPS 500
                       ******************99999999999***************************************9987666666454555689****** PP

                       EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       g+++++++ng  kvtwveh++++++++h l+r+l++sgla ga +w atlqrqce+
  LOC_Os04g48070.1 501 GCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 556
                       ******************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2289160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2491162IPR009057Homeodomain-like
PROSITE profilePS5007118.366102162IPR001356Homeobox domain
SMARTSM003893.2E-20103166IPR001356Homeobox domain
CDDcd000861.13E-20104160No hitNo description
PfamPF000467.5E-20105160IPR001356Homeobox domain
PRINTSPR000318.7E-5133142IPR000047Helix-turn-helix motif
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PRINTSPR000318.7E-5142158IPR000047Helix-turn-helix motif
PROSITE profilePS5084841.854306559IPR002913START domain
SuperFamilySSF559612.2E-23309556No hitNo description
CDDcd088756.19E-103310555No hitNo description
SMARTSM002344.2E-35315556IPR002913START domain
PfamPF018529.1E-40316556IPR002913START domain
SuperFamilySSF559613.85E-17576778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MQFPFSGAGP GVFTSSPALS LALADAVAGR NSGGGGKMVT AAHGGVGGGG GGGRAKARDA  60
LEVENEMSRS GSDHLDVVSC GDAGGGGGDD DDDEDAEHGN PPKRKKRYHR HTPQQIQELE  120
AMFKECPHPD EKQRAELSKR LGLEPRQVKF WFQNRRTQMK MQLERHENSL LKQENDKLRS  180
ENLSIREATS NAVCVGCGGP AMLGEVSLEE HHLRVENARL KDELSRVCAL AAKFLGKSIS  240
VMAPPQMHQP HPVPGSSLEL AVGGIGSMPS ATMPISTITD FAGAMSSSMG TVITPMKSEA  300
EPSAMAGIDK SLFLELAMSA MDELVKMAQM GDPLWIPGAS VPSSPAKESL NFEEYLNTFP  360
PCIGVKPEGY VSEASRESGI VIIDDGAALV ETLMDERRWS DMFSCMIAKA STTEEISTGV  420
AGSRNGALLL VSDEHSVMQA ELQVLSPLVP IREVKFLRFS KQLADGVWAV VDVSADELMR  480
DQGITSASST ANMNCRRLPS GCVLQDTPNG FVKVTWVEHT EYDEASVHPL YRPLLRSGLA  540
LGAGRWIATL QRQCECLALL MSSIALPEND SSAIHPEGKR SMLKLARRMT DNFCAGVSTS  600
STREWSKLVG LTGNIGEDVH VMARKSVDEP GTPPGVVLSA ATSVWMPVMP ERLFNFLHNK  660
GLRAEWDILS NGGPMQEVTS IAKGQQNGNT VCLLKASPTK DKQNSMLILQ ETCADASGSM  720
VVYAPVDIPA MHLVMSGGDS SCVALLPSGF AILPAGPSIG ADHKMGGSLL TVAFQILANS  780
QPSAKLTVES VETVSNLISC TIKKIKTALH CDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.88330.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887620.0
Expression AtlasQ7Y0V9-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g48070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g48070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016470.0AB101647.1 Oryza sativa Japonica Group Roc4 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637147.10.0PREDICTED: homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLI1PNZ40.0I1PNZ4_ORYGL; Uncharacterized protein
STRINGLOC_Os04g48070.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14515136
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein