PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g47860.2
Common NameOs04g0566400, OSNPB_040566400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 614aa    MW: 63814.4 Da    PI: 9.9362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g47860.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0597119123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  LOC_Os04g47860.2  97 FVCEVCNKGFQREQNLQLHRRGH 119
                       89*******************88 PP

2zf-C2H211.50.00091174196123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  LOC_Os04g47860.2 174 WKCDKCSKRYAVQSDWKAHSKIC 196
                       58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-796119No hitNo description
PROSITE profilePS5015711.09497119IPR007087Zinc finger, C2H2
PfamPF121714.0E-597119IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004197119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-7169194No hitNo description
SMARTSM00355140174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QLAASLTGVA TAAPTAASSQ  60
GAPPAAPPAK KKRNLPADPD AEVIALSPKT LLATNRFVCE VCNKGFQREQ NLQLHRRGHN  120
LPWKLKQKNP AQAQRRRVYL CPEPTCVHHD PARALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KRYAVQSDWK AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESS RLPPTSLSSL  240
TSHLYGASNA GNMALSLSQV GSHLTTSLQD GGGHHHHPSP ELLRLGGAGG GGGAGGGSSI  300
AARLDHLLSP SGASAFRPPQ PAFFLNAAAA AAATGQDFGD DAGNGQHSFL QAKPFHGLMQ  360
LPDLQGNGAG GPGAPGPNLF NLGFFANNGN SSGSSHEHAS QGLMSNDQFS CGAGGGGGLT  420
RRRRGSPAVT SLVATMFLLQ GSTTIKRRCC RRCRRPALLQ KAAQMGATSS ANGPGSMFRG  480
FVGSSPHMRP AAQHMDQSDA HLNDLMNSLA GGGVNAAAMF GGTNGGGVPG AGMFDPRLCD  540
IEHEVKFSQG GGGGGGAGAG TGDGTRDFLG VGGGGIVHGM STPRGDHHQS SSDMSSLEAE  600
MKSASSFNGR RMP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525650.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379903460.0
Expression AtlasA0A0P0WDK4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g47860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g47860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105283.10.0uncharacterized protein LOC542199
RefseqXP_008668636.10.0PREDICTED: LOC542199 isoform X1
RefseqXP_008668635.10.0PREDICTED: LOC542199 isoform X1
RefseqXP_008668634.10.0PREDICTED: LOC542199 isoform X1
RefseqXP_008668633.10.0PREDICTED: LOC542199 isoform X1
TrEMBLA0A0P0WDK40.0A0A0P0WDK4_ORYSJ; Os04g0566400 protein
STRINGBGIOSGA016934-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2