PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g47080.1
Common NameLOC4336636, Os04g0557800, OSJNBa0065O17.8, OSNPB_040557800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 575aa    MW: 62407.3 Da    PI: 4.6044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g47080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12398445355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f  L++++P+        +++Ka+iL +++ Y+k+L+
  LOC_Os04g47080.1 398 KNHVMSERRRREKLNEMFLILKSVVPSiH------RVDKASILAETIAYLKELE 445
                       5899***********************66......9***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5113196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.599395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17398460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-14398449No hitNo description
Gene3DG3DSA:4.10.280.104.5E-16399454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9399445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS  60
MNLMADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG  120
PRQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD  180
PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA  240
VAGGEVAECE PNSDNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV  300
PTSSPAPDQA PAAEATDVDD VVVAALDSSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI  360
SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS  420
VVPSIHRVDK ASILAETIAY LKELEKRVEE LESSSQPSPC PLETRSRRKC REITGKKVSA  480
GAKRKAPAPE VASDDDTDGE RRHCVSNVNV TIMDNKEVLL ELQCQWKELL MTRVFDAIKG  540
VSLDVLSVQA STSDGLLGLK IQAKFASSAA VEPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A9e-222419623192Transcription factor MYC3
4rs9_A9e-222419623192Transcription factor MYC3
4rqw_B9e-222419623192Transcription factor MYC3
4rqw_A9e-222419623192Transcription factor MYC3
4ywc_B2e-212419262227Transcription factor MYC3
4ywc_A2e-212419262227Transcription factor MYC3
4rru_A2e-212419262227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403408ERRRRE
2404409RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO10865390.0
Expression AtlasQ7XPS3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g47080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g47080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210790.0AB021079.1 Oryza sativa Plw-OSB1 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635227.10.0PREDICTED: anthocyanin regulatory Lc protein
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLQ7XPS30.0Q7XPS3_ORYSJ;
STRINGLOC_Os04g47080.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.34e-62bHLH family protein