PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46670.1
Common NameLOC4336604, Os04g0552400, OsJ_15712, OSNPB_040552400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 571aa    MW: 59626.8 Da    PI: 5.5392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05124141219
                       EETTTTEEESSHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                       +C++Cgk F++++++  H
  LOC_Os04g46670.1 124 VCKNCGKEFTSWEHFLEH 141
                       7**************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5363557IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-63557No hitNo description
SMARTSM003550.963557IPR015880Zinc finger, C2H2-like
PfamPF139120.00473657IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-6118142No hitNo description
SMARTSM00355140123143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141123150IPR007087Zinc finger, C2H2
SuperFamilySSF576678.28E-8281304No hitNo description
PfamPF139123.2E-9282306IPR007087Zinc finger, C2H2
SMARTSM003550.13282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242282309IPR007087Zinc finger, C2H2
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SuperFamilySSF576678.28E-8390417No hitNo description
PfamPF139124.8E-11395418IPR007087Zinc finger, C2H2
SMARTSM003553.7395417IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182395417IPR007087Zinc finger, C2H2
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG  60
DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR  120
SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD DDEDDVDHSL QPWSPSPEAD GEEDSAPAAG  180
WLKGKRSRRC KGTGVDLSPT PSACAAGEEE DLANCLVMLS SSKVDQAGVT EAEQRSSSSA  240
SKEHKRLITF MEPTTYVLDT VMALPPPAPA PQYVSTVPRG MFECKACKKV FSSHQALGGH  300
RASHKKVKGC FAAKLESNAA EVAEPSHHAE VADRSEDNPA KATSDARRNV HASIDGDGNA  360
GTSDAAAELS MAIVPIEPPV AALAAAPLKK KGKMHECSVC HRLFTSGQAL GGHKRCHWLT  420
SSSADHTASV PPLADDLVPL SFRPMLDAPE PALDLSIAAN PPLLASAATV RPKVGGSSFH  480
LDAPPPVYIP SSPAIPSQRN KATATTGSQN ANDAVGLSTA AAEDEADSTT VKRARLSDLK  540
DVSMAGETTP WLQVGIGSSS RGGADDNDKE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387393LKKKGKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528580.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329796470.0
Expression AtlasB9FGH7-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696230.0AK069623.1 Oryza sativa Japonica Group cDNA clone:J023023M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0PREDICTED: uncharacterized protein LOC4336604 isoform X1
TrEMBLB9FGH70.0B9FGH7_ORYSJ; Os04g0552400 protein
STRINGLOC_Os04g46670.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-21C2H2-like zinc finger protein