PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g39570.2
Common NameWRKY35
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 784aa    MW: 80992.3 Da    PI: 6.8198
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g39570.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30290347260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  LOC_Os04g39570.2 290 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 347
                       8****************************************.***************85 PP

2WRKY33.49e-11521543123
                       ---SS-EEEEEEE--TT-SS-EE CS
              WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                       ldDgy+WrKYGqK+vkg+++p s
  LOC_Os04g39570.2 521 LDDGYRWRKYGQKVVKGNPNPSS 543
                       59******************976 PP

3WRKY54.13.2e-175605972259
                       EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       rsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  LOC_Os04g39570.2 560 RSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 597
                       9************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-28278348IPR003657WRKY domain
PROSITE profilePS5081123.571284348IPR003657WRKY domain
SuperFamilySSF1182907.98E-25285348IPR003657WRKY domain
SMARTSM007746.1E-33289347IPR003657WRKY domain
PfamPF031061.9E-23290346IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-34506599IPR003657WRKY domain
SuperFamilySSF1182901.1E-23513599IPR003657WRKY domain
PROSITE profilePS5081131.158516599IPR003657WRKY domain
SMARTSM007742.5E-33521598IPR003657WRKY domain
PfamPF031062.2E-6522543IPR003657WRKY domain
PfamPF031063.3E-11560597IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MEGDIAMEEW KDSNHRGADY LMTMPMQNFL ADAFPPPELL EGEGGFEKHG LSVAVGSPPP  60
TPPPPEDGCS PLPLTPQFGQ KFGSGGGGGG SLADRRARGG FSNVARISVP YNQPAADVSS  120
AGAPSPYVTI PPGLSPTTLL ESPVFSNAMG QASPTTGKLH MLGGANDSNP IRFESPRIEE  180
GSGAFSFKPL NLASSHYAAE EKTKSLPNNQ HQSLPISVKT EATSIQTAQD EAAANQLMQP  240
QFNGGKRSRA APDNGGDGEG QPAEGDAKAD SSSGAAAVAV VAAAAAAVAE DGYSWRKYGQ  300
KQVKHSEYPR SYYKCTHASC AVKKKVERSH EGHVTEIIYK GTHNHPKPAA SRRPPVHPPP  360
PSPATTTTTP LPPGDAQADH APDGGGGSTP VGAGQAGAEW HNGGVVGGEG LVDATSSPSV  420
PGELCESTAS MQVHEGAAAA QLGESPEGVD VTSAVSDEVD RDDKATHVLP LAAAAADGES  480
DELERKRRKL DSCATMDMST ASRAVREPRV VIQTTSEVDI LDDGYRWRKY GQKVVKGNPN  540
PSSSSSMDAD RSLVVVVVIR SYYKCTHPGC LVRKHVERAS HDLKSVITTY EGKHNHEVPA  600
ARNSGHPAGS ASPGGGAGSS SQPHGVGVGG RRPEVPSVQE SLMRLGGGCG AAPFPPHFGL  660
HLPPPPPRDP LAPMSNFPYS LGHAPSPALR GLPPPPPPPP SASALAVAGL GGVVEGLKYP  720
MLAPPSVHSL LRHRQGGGME AVVVPKAEVK QEAMRPAAAV AGAGRGAAVY QQAMSRVSLG  780
NQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32272600278Probable WRKY transcription factor 4
2lex_A3e-32272600278Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335191730.0
Expression AtlasQ7XAA6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g39570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g39570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418510.0AY341851.1 Oryza sativa (japonica cultivar-group) WRKY10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
TrEMBLQ7XAA60.0Q7XAA6_ORYSJ; WRKY transcription factor 35
STRINGLOC_Os04g39570.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-86WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]