PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g31900.1
Common NameLOC4335664, Os04g0388500, OSNPB_040388500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 1004aa    MW: 112062 Da    PI: 6.184
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g31900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11772.4e-55111272117
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np 
  LOC_Os04g31900.1  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPC 103
                       67779**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylev 117
                       fqrrc+w+Le ++e+ivlv+y+ev
  LOC_Os04g31900.1 104 FQRRCFWMLEPAYEHIVLVQYREV 127
                       **********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-4713126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.6E-16451533IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.108.0E-6451541IPR013783Immunoglobulin-like fold
PfamPF018333.6E-7451532IPR002909IPT domain
SuperFamilySSF484031.21E-15482526IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.21E-15646743IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-15646742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.769648740IPR020683Ankyrin repeat-containing domain
CDDcd002041.63E-9653740No hitNo description
PfamPF127964.1E-7664742IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-4681710IPR002110Ankyrin repeat
PROSITE profilePS5008810.927681713IPR002110Ankyrin repeat
SMARTSM002481800720749IPR002110Ankyrin repeat
SMARTSM0001527801823IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529802831IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-6857907IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95860889IPR000048IQ motif, EF-hand binding site
SMARTSM0001519861881IPR000048IQ motif, EF-hand binding site
PfamPF006120.022862880IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6882904IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64883911IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5884904IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 1004 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESLHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRWVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEEM  300
QNGLGRGIPS SWEDVLQSSS GFPAPSIYQS TPHYPQNSEY QPPGSLYNSD MQQISAAKRF  360
LLETEDSIDS PSYNYVPREE GNNGTNTLSV HDYSLQSSLN PDWKKTAPLT LQSNLYGSEI  420
PSLLLDHGQF ESLSSGENTR LILGQNPRFS IREVSPEWTY CYEITKVIIT GDFLCDPSSS  480
CWAVMFGDSE VPAEIVQAGV LRCHTPLHSS GKLTICVTSG NREICSEVKD FEFRAKSTAS  540
SFLDISPSSR SLKSSEELLL LAKFVRMLLC ENGSHANSNG DPQSVQCPKL KMNDEHWQRL  600
IDELKGGCEN PLNVSDWIME ELLKSKLQQW LSVKLQGYDG IACSLSKHEQ GIIHLISALG  660
YEWALSSILS ADVGINFRDT NGWTALHWAA YFGREKMVAA LLAAGASAPA VTDPTAQDPV  720
GKTAAFLASE RGHLGLAAYL SEVSLTSYLA SLTIQESDTS KGSAAAEAER AVESISQRNA  780
QLHGGTEDEL SLKDSLAAVR NAAQAAARIQ NAFRAFSFRK RQQKTARLKD EYGMTQEDID  840
ELAAASRSYY QSLLPNGQFY DKAAVSIQKK FKGWKGRRHF LNMRRNAVKI QAHVRGHQVR  900
KKYKTFVSTV SVLEKVILRW RRKGHGLRGF RAEQTAMAEA EEDDEDDDDD DFNDDEAVKV  960
FRRQKVDESV KEAMSRVLSM VDSPEARMQY RRMLEEFRQA TAE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.117020.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154580590.0
Expression AtlasQ0JDP3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g31900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g31900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG21e-170CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLQ0JDP30.0Q0JDP3_ORYSJ; Os04g0388500 protein
STRINGLOC_Os04g31900.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-149Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains