PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g31730.1
Common NameLOC4335657, Os04g0386900, OSJNBa0044M19.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 213aa    MW: 22326.2 Da    PI: 6.2715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g31730.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-1296176489
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                       ++ +s+v    ++v+p++fa      + ++ t    + +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l  g  +
  LOC_Os04g31730.1  96 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 176
                       677899999999********433...3333.44446789********..88888899***********************5423222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1590189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-1590190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1391189No hitNo description
PROSITE profilePS5086312.49293191IPR003340B3 DNA binding domain
PfamPF023622.8E-994176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI  60
AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS  120
RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER  180
VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.501810.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896220.0
Expression AtlasQ7XLP4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g31730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g31730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199990.0AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.11e-151PREDICTED: B3 domain-containing protein Os04g0386900
SwissprotQ7XLP41e-152Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0D9ZJY61e-150A0A0D9ZJY6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GZV71e-150A0A0E0GZV7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8991e-150A0A0E0P899_ORYRU; Uncharacterized protein
STRINGLOC_Os04g31730.11e-150(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7665916
MonocotsOGMP89543545