PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g31290.1
Common NameLOC107276663, Os04g0381700, OSNPB_040381700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 353aa    MW: 36814.3 Da    PI: 4.9439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g31290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10136180655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  LOC_Os04g31290.1 136 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 180
                       568*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15127196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-12128181No hitNo description
PROSITE profilePS5088815.294130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG GVGGGDDRMQ EWQNNCEGAG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKDLQ  180
AHARKLKEEV AALEEARPIR PPPPSAAAQR PQRQPRRVAA AAAQLARAAD AAAVTTAAAA  240
PHGARVAHVG AAQVGEGRFF VTVECEPAAA AARGGGGGVA APVCAAVESL SCFTVESSTV  300
GCSPDRVVAT LTLKVSEAEE DVSAISECTV KLWVMAALLK EGFRPQPTVQ IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142KRRDRSKTIVSERKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0N7KIY3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g31290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g31290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350400.0CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634338.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A0N7KIY30.0A0A0N7KIY3_ORYSJ; Os04g0381700 protein
STRINGLOC_Os04g31290.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP72711118
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-21FER-like regulator of iron uptake