PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g28580.1
Common NameOSJNBb0002N06.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 886aa    MW: 101579 Da    PI: 8.5691
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g28580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.81.5e-17138218190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk          + r+gC a++k++++   + w vtk+++ HnH++ 
  LOC_Os04g28580.1 138 NFYNVYAVSKGFGIRLDKDRMN-TEKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINRSGaGSGWSVTKVVSTHNHPMK 218
                       6****************99998.566699**********99887655.........9**************99999************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-13138218IPR004330FAR1 DNA binding domain
PfamPF105512.3E-33340433IPR018289MULE transposase domain
PfamPF044341.3E-5622655IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.299622658IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-7633660IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MDKQVKNHRP SVGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS  60
RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGAGIPMER MVVDNVDSSA VIPPEYADPQ  120
ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT EKQRTMRQIC CSHQGRNPKT  180
KKPSVRIGCP AMMKINRSGA GSGWSVTKVV STHNHPMKKS VGVTKNYQSH NQIDEGTRGI  240
IEEMVDSSMS LTNMYGMLSG MHGGPSMVPF TRKAMDRLAY AIRRDESSDD MQKTLDVLKD  300
LQKRSKNFFY SIQVDEACRV KNIFWSHAVS RLNFEHFGDV ITFDTTYKTN KYNMPFAPFV  360
GVNNHFQSTF FGCALLREET EESFTWLFNT FKECMNGKVP IGILTDNCPS MAAAIRTVFP  420
NTIHRVCKWH VLKKAKEFMG NIYSKRHTFK KAFHKVLTQT LTEEEFVAAW HKLIRDYNLE  480
KSVYLRHIWD IRRKWAFVYF SHRFFAGMTT TQRSESANHV FKMFVSPSSS MNGFVKRYDR  540
FFNEKLQKED SEEFQTSNDK VEIKTRSPIE IHASQVYTRA VFQLFSEELT DSLSYMVKPG  600
EDESTVQVVR MNSQESFLRK EYQVSCDLER EEFSCVCKMF EHKGILCSHI LRVLVQYGLS  660
RIPERYILKR WTKDARDTIP PHLHGYKDDV DASQSRSYRH VMLNRKTVEV AKIANKDVQT  720
FKMAMTVMNK LLEDMKNQLS LDDGDNSREA PKRAARHKSR STVLTEDGNE EVGGGDEDSE  780
YDVPSEDEGG NLTADILPPL KKKSRGRPKV NRYKSGGEVA SLKRRKEVGI EKKNTTNECE  840
SVEEENQVID HEDEVPFPRR FCHTCHEAGH NSRTCGRTST YKRKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Expression AtlasQ7XRZ8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g28580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g28580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551190.0CR855119.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092G14, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6629910.0AL662991.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XRZ80.0Q7XRZ8_ORYSJ;
STRINGLOC_Os04g28580.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5