PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g28280.1
Common NameLOC4335553, Os04g0350700, OSJNBa0038P21.14, OSNPB_040350700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 264aa    MW: 28146.6 Da    PI: 8.2454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g28280.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-1091138455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  LOC_Os04g28280.1  91 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 138
                       8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1785156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-1185142No hitNo description
PROSITE profilePS5088815.61287137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1687155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-791138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-993143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNPTTAAAAD QPSKPSAAAA ARKRKSSAKP KASSSSLPTA TATTNASPKR SKVAAGAGDD  60
GDADADAAEE KPEPAKDYIH VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI  120
TGKALMLDEI INYVQSLQRQ VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP  180
TTTTAFSYTG SPATADPFTV YNCWELDLHT AMQMGATTGL SQDGPIATMA PSPSPLPHHP  240
PLHGFYGGQQ QQGTTVNHMK AEP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879700.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329938140.0
Expression AtlasQ0JDZ1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g28280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g28280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO6814750.0FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.
GenBankAK1086050.0AK108605.1 Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635665.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT21e-54BH062_ARATH; Transcription factor bHLH62
TrEMBLQ0JDZ10.0Q0JDZ1_ORYSJ;
STRINGLOC_Os04g28280.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-48bHLH family protein