PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g28160.1
Common NameOs04g0349100, OsJ_14368, OSJNBa0038P21.2, RR28
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARR-B
Protein Properties Length: 381aa    MW: 42765.4 Da    PI: 5.2645
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g28160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.85.5e-09173219455
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       l Wtp L ++F++a+e LG + +      l +m+v+ + ++++  HLQk+Rl
  LOC_Os04g28160.1 173 LMWTPHLQKKFLHALEILG-EGQ----ISLMIMDVDNIDRKQISTHLQKHRL 219
                       78****************5.542....34789*******************8 PP

2Response_reg47.11.3e-16151222107
                       EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       +++d+++  ++  ++++  + ++  v++++++ +al+ l+++   ++l+l D++m +m+G+e+lk  re ++++++i+++++ +  +++++++
  LOC_Os04g28160.1  15 MVIDEDKCHADSTCSMICtQLNF-CVTVFTSPIKALDFLQNQAegVHLVLADVQMEEMNGFEFLKVARELHKSIQVIMMSTETTIYTMKRCVQ 106
                       6776666666665555554999*.***************999999************************************************ PP

                       TTESEEEESS--HHHH CS
      Response_reg  92 aGakdflsKpfdpeel 107
                       +Ga+  + Kp d   +
  LOC_Os04g28160.1 107 LGAQILVKKPLDVVTI 122
                       **********987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.97E-2012129IPR011006CheY-like superfamily
SMARTSM004481.5E-1012126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.50213130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-2014129No hitNo description
CDDcd001564.07E-1415129No hitNo description
PfamPF000729.9E-1515122IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466893.58E-10167223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-10168223IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-8173220IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAQNEGIPNG TLSAMVIDED KCHADSTCSM ICTQLNFCVT VFTSPIKALD FLQNQAEGVH  60
LVLADVQMEE MNGFEFLKVA RELHKSIQVI MMSTETTIYT MKRCVQLGAQ ILVKKPLDVV  120
TIQNLWQHLD IKVLKMEKIK DMLQGVGDKS TCANEMNSFP ENQKDGTKRK YYLMWTPHLQ  180
KKFLHALEIL GEGQISLMIM DVDNIDRKQI STHLQKHRLQ LKKKLSKASF TKGSNEDTSN  240
PSAKNHLTCR TMTLQPHPYT NQPAETTMQI HSEDVEHDDV YDAMRRALQD GTAFDESKYS  300
SDPFSNEDED VVGDGYADKA NAIDSSGDHY QVAVVLTTPH NVDYTQEIMN KVTTSDDVQV  360
TRGGKATVSR LVDYSDSDSD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.234830.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XKS9
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g28160.1
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering and altered kernel color. {ECO:0000269|PubMed:16891544}.
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g28160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-167PREDICTED: two-component response regulator ORR29-like
SwissprotQ7XKS90.0ORR28_ORYSJ; Two-component response regulator ORR28
TrEMBLA0A0E0P7N90.0A0A0E0P7N9_ORYRU; Uncharacterized protein
STRINGLOC_Os04g28160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1117845
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.55e-13ARR-B family protein
Publications ? help Back to Top
  1. Pareek A, et al.
    Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.
    Plant Physiol., 2006. 142(2): p. 380-97
    [PMID:16891544]
  2. Schaller GE, et al.
    Nomenclature for two-component signaling elements of rice.
    Plant Physiol., 2007. 143(2): p. 555-7
    [PMID:17284581]