PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g23550.1
Common NameLOC4335417, Os04g0301500, OSNPB_040301500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 311aa    MW: 32948.1 Da    PI: 4.7984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g23550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-1395139655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  LOC_Os04g23550.1  95 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 139
                       579*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7789138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1792154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-1393143No hitNo description
PfamPF000101.7E-1094139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1695144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5231290No hitNo description
CDDcd048730.00203232298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG  60
DAAAAVAGSG GGMTTMMMGG GGGGGDDAGG ANKNILMERD RRRKLNEKLY ALRSVVPNIT  120
KMDKASIIKD AIEYIQRLQA EEQQMLREVA ALESAAAASA APAAANPFAG LGADEEHEYG  180
HHHPSSSSER TKKVKRALSV SSISDALLAA AAPAPPVEIQ ELRVSEVGDR VLVVSVTCSK  240
RRDAMARVCR ALEELRLRVI TANITSVAGC LMHTLFVEVD HMDSVQMKQM VEAALSQLVA  300
TGSPLSSMSY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.60430.0callus| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO294666340.0
Expression AtlasQ0JEB7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g23550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g23550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.10.0PREDICTED: transcription factor bHLH35
TrEMBLQ0JEB70.0Q0JEB7_ORYSJ; Os04g0301500 protein
STRINGLOC_Os04g23550.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-44bHLH family protein