PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g22990.1
Common NameOSJNBa0041M21.10, OSJNBa0093P23.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 2075aa    MW: 232080 Da    PI: 8.6202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g22990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.7e-1330106190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfYneYA+  GFs+r++k k+              ++  k+ e+++   ++r++ra t++gCka+l+++++  +g w v+ +e  H+H la
  LOC_Os04g22990.1  30 KFYNEYARCKGFSIRRDKVKRF-----------SGYRTLKNFERTN---RKREPRALTHCGCKAMLEIELNGeTGMWFVSGFEARHSHRLA 106
                       6**************9986665...........4455555555543...4788******************99***************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1030106IPR004330FAR1 DNA binding domain
PfamPF105512.7E-29143231IPR018289MULE transposase domain
PROSITE profilePS509669.47414453IPR007527Zinc finger, SWIM-type
SMARTSM005750.0039428455IPR006564Zinc finger, PMZ-type
PfamPF037321.9E-1711431233IPR005162Retrotransposon gag domain
CDDcd003035.98E-1014701567No hitNo description
SuperFamilySSF566727.56E-11116872048No hitNo description
Gene3DG3DSA:3.10.10.108.1E-2316921837No hitNo description
CDDcd016474.59E-7317271904No hitNo description
PfamPF000789.1E-1817441902IPR000477Reverse transcriptase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2075 aa     Download sequence    Send to blast
MDEDEVSLEE MEEYNLVASK LFRSEEDGYK FYNEYARCKG FSIRRDKVKR FSGYRTLKNF  60
ERTNRKREPR ALTHCGCKAM LEIELNGETG MWFVSGFEAR HSHRLANPDL VAFLRSHREV  120
NDAQKAEAVE LGVGGLRTCQ IITYHVNRYS LPFVPFVGAN HHRSTIIFGC GILSNESVSS  180
YVWLLQTLLE AMHQKHPKSL ITDGDASMAK AITKVMPNTD HRLCSWHIEE NMKCHLRRQK  240
LADFKKFLYD AMDVDDFERC WVEYKAKYGF NENNLWISMM YELRKKWSTA YMKGTRFLGM  300
RSNQRSESLN SRLHRHLDRK MSLVDLVEHY EFCLSRIRRN EAVLDARASQ SVSFTTICAD  360
PLEKSAARIY MPAMFKKVWA EIRKLYEWEV FNVARQDGAG VFTVASKDNN VVQVHVWCTF  420
EEQSMNSANC DCKKLECDGI PCSHVCAVLK FLGVGTIPHC CVMTTQICSI HALYDLIATF  480
SVPQREAVHK CGFGGLLKIH RINVHRILCM WIANQFDTKA EAFKIQGSYL SLTNRDAEHL  540
LDLPSQGEEI FEPPQTKNRD LFDEFKTTSK QGAHIKLSLQ EYFQTNKGIH DDNFIHRFVL  600
FVIGVFLCPT TQRYVSSAYL NLVEDVNAIS AINWTSLNLN HLMKSIKNIS TIKGVNLEGN  660
LPLLRLWYWE KLRADNLDPT IDYTMRDKPL IQYWDKHKAK KRYKIDTTYD YAGADHGDSE  720
RNHSERMPPK RVVKEKVVRR KESDAGPDMA AEEGAEPSAS VAEDREAQAP SQPPSDPAPS  780
QPSSAPATSV QVPNTADVAK AAAAARALQT RAEILSTNQL VVPQAAPSQP TAPTALTVVQ  840
AQISLDPEAQ AEADIEAMRQ NMTRLQDMLR QMQEQQQAYE TTRRTKATSA PILQYSAGYA  900
PPQVQPQVVT QSSPPLAAQP PVYFAGQHQP PGQAPQSVAE GASALQAQLQ AFLQQLNQSH  960
YISSTTPSAH PVGNTSQGAP NWLPPIQPGS GPSPSSQGPQ FDFVNTVQVP TVQQQVPTPG  1020
FGTNQAPIQA AMMWSQPIFD PSMAAQQVQP VGAGQSNATA QLYAQAAISP FATPYPQQGA  1080
VNRAGGEKGL PLSGGIKTRP IPPQFKFPPV PRYSGETDPK EFLSIYESAI EAAHGDENTK  1140
AKVIHLALDG IARSWYFNLP ANSIYSWEQL RDVFVLNFRG TYEEPKTQQH LLGIRQRPGE  1200
SIRENMRRFS QARCQVQDIT EASVINAASA GLLEDELTRK IVNKEPQTLE HPLRIIDGFA  1260
RGEEDSKRRQ AIQAEYDKAS VAAAQAQAQV QIAEPPPLSV RQSQPAIQGQ PPRQGQAPMT  1320
WRKFRTDRAG KAVMAVEEVQ ALRKEFDTQQ ASNHQQPARK KVRKDLYCAF HGRSSHTTEQ  1380
CRNIRQRGNV QDPRPQQGTT VEAPREAVQE QTTPAKQRQD TQRRRKMQIR MVHSITSAGE  1440
GAPQYVNQLI SFGPEDAEGV LFPHQDPLVI SAEIAGFEVR RILVDGGSSA DVIYAEAYAK  1500
MGLPTQALTP ALTSLRGFSG EAVQVLGQAL LLIAFGSGEN RREEQILFDV VNIPYNYNAI  1560
FGRATLNKLE AISHHNYLKL KMPGPTGVIV VKGLQPSAAS KCDLAIINRA VHNVKTEPHE  1620
RPKHTPKPTP HGKVTKVQIN DADPTKLVSL GGDMGEEEVE SILEVLKKNI DIFAWSPDEV  1680
GGVPADLIMH HLAVKPNIKP RKQKLRKMSA DRQEATKTEV QKLLRAGVIQ EIDHPEWLAN  1740
PVLVRKSNGK WRMCVDFTDL NKACPKHDFP LPRIDQLVDL TAGCELMSFL DAYSGYHQIH  1800
MNPLDIPKTS FITPFGTFCH LRMPFGLRNA GATFARLVYK VLGKQLGRNV EAYVDDIVVK  1860
SRKAFDHAID LQETFDNLCV AGIKLNPEKC VFSVRVGKLL GFLVSETGIE ANPEKIDAIQ  1920
QMKPPSSIHE VQKLAGRIAA LSRFLSKAVE RGLPFFKTLR DARKFNWTPE CQAAFDELKQ  1980
HLQSPPVLIS PPRGSELLLY LAASPVAVSA ALVQKTESRQ KSVYFVSEAL QGAQTRYIEM  2040
EKLAYALSRP EFLSKIPNAY MCVNPRPGIS RGTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A8e-421677203743397Reverse transcriptase/ribonuclease H
4ol8_B8e-421677203743397Reverse transcriptase/ribonuclease H
4ol8_E8e-421677203743397Reverse transcriptase/ribonuclease H
4ol8_F8e-421677203743397Reverse transcriptase/ribonuclease H
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114211426QRRRKM
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7X8F3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g22990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g22990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL7316220.0AL731622.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093P23, complete sequence.
GenBankAL7315950.0AL731595.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7X8F30.0Q7X8F3_ORYSJ;
STRINGLOC_Os04g22990.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-45FAR1-related sequence 5