PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g21950.1
Common NameLOC4335388, Os04g0287400, OSNPB_040287400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 327aa    MW: 34304.8 Da    PI: 10.33
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g21950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31247305259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  LOC_Os04g21950.1 247 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPTDPSMLIVTYEGEHRHS 305
                       699***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-20195244IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-32234305IPR003657WRKY domain
PROSITE profilePS5081129.861241307IPR003657WRKY domain
SuperFamilySSF1182906.8E-26244306IPR003657WRKY domain
SMARTSM007744.9E-37246306IPR003657WRKY domain
PfamPF031064.4E-26248304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MITMDLMGGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA QEQQQQVDCR  60
EITDMTVSKF KKVISMLNRT GHARFRRGPV VAQSSGPAAS EPAPVRSSPS AVSRPMTLDF  120
TKAASGYGKD AGFSVSGISA ASSSFLSSVT GDGSVSNGRG GGSSSLMLPP PPATSCGKPP  180
LSSAAAAMSA GAGHKRKCHD HAHSENVAGG KYGSTGGRCH CSKRRKHRVK RTIRVPAISS  240
KVADIPADDF SWRKYGQKPI KGSPFPRGYY KCSTLRGCPA RKHVERDPTD PSMLIVTYEG  300
EHRHSPSAAG QDHPPAPPPP LALPLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20234304271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496560.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0JEE2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g21950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g21950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009540.0AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633572.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV151e-105WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLQ0JEE20.0Q0JEE2_ORYSJ; Os04g0287400 protein
STRINGLOC_Os04g21950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35571127
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.17e-91WRKY DNA-binding protein 11