PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g18650.1
Common NameB1234D02.6, LOC4335322, Os04g0257500, OSNPB_040257500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 129aa    MW: 14193.6 Da    PI: 5.957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g18650.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-211061155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GVr+++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  LOC_Os04g18650.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61
                      89********.**********8333..4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.79E-311069No hitNo description
PfamPF008471.1E-151061IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-241069IPR016177DNA-binding domain
PROSITE profilePS5103224.5131169IPR001471AP2/ERF domain
SMARTSM003803.6E-361175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321169IPR001471AP2/ERF domain
PRINTSPR003673.5E-121223IPR001471AP2/ERF domain
PRINTSPR003673.5E-123551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK  60
GAMAVLNFPG RTSSTGSSSS SSSTPPAPVT TSRHCADTTE KVELVYLDDK VLDELLAEDY  120
SYRNNNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-291274668ATERF1
3gcc_A7e-291274668ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329929540.0
Expression AtlasQ6MWK9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g18650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g18650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBX8426020.0BX842602.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1234D02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAK1077450.0AK107745.1 Oryza sativa Japonica Group cDNA clone:002-132-H03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635372.11e-90PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0E0P6G81e-90A0A0E0P6G8_ORYRU; Uncharacterized protein
TrEMBLQ6MWK91e-90Q6MWK9_ORYSJ; B1234D02.6 protein
STRINGLOC_Os04g18650.13e-90(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.13e-23Ethylene-responsive element binding factor 14