PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g02730.1
Common NameOs04g0117600, OSNPB_040117600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 697aa    MW: 77529.9 Da    PI: 7.7844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g02730.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-061151271426
                       --TTTTT-SS-SS CS
           zf-CCCH  14 tCkyGdrCkFaHg 26 
                        CkyGd+C+F+H+
  LOC_Os04g02730.1 115 SCKYGDSCRFSHD 127
                       7***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5398129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.704.0E-74340583IPR013785Aldolase-type TIM barrel
CDDcd028016.42E-95344579No hitNo description
SuperFamilySSF513952.14E-64344655No hitNo description
PfamPF012077.1E-54347581IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360428446IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MPHCLLTAPQ PWPPPPPPPP RRLPPTRRTP PRPLPPLRGP ARRSWSPVQW PPSSPPSSAR  60
PLSATPPKDE GKANGGGAVV AEKKSKRQLK RERKQEQKSS SHLCIEVGKS GNVSSCKYGD  120
SCRFSHDIDA YLAQKPADLE GTCPFTNLDQ LCPYGLTCRF LGTHKDIHAA SGNLSEKHEI  180
NALNKDIQKL LWKNKYKFPK ASAQIKLLGL KEVIKSKPDA ANDDKKVNHD NLDGNDDENK  240
EPLCNPPVNA ECDSTLCEEL DRSEGEPLID NSIPCVEPRP TKKSKVESDE IDKHGAGTLN  300
TNTESEDPNL SNGLEPSNNS SSCRTDLITT PHLREKKIID FREKLYLAPL TTVGNLPFRR  360
LCKTLGADIT CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVD  420
NECSVDFIDI NMGCPIDIVV NKGAGSSLLT KPMRIKSIVQ AASTVTEKPL TVKVRTAFFE  480
GRNRADSIVS DIYDWGASAI TVHGRSRQQR YSKLADWDYI YQCAQKAPDQ LHVVGNGDVF  540
SFTDWNKHVS GCSKISTSMI ARGALIKPWI FTEVKEQRHW DITSGERFNI LKDFVSFGLE  600
HWGSDSKGVE TTRYFLLEWL SYTCRYIPVG LLDVIPQRLN WRPPSYCGRD DLETLMISDS  660
AADWIRISEM LLGKVPEGFT FTPKHKSNAY DRAENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vhn_A2e-203445766228putative flavin oxidoreductase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.76180.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379883620.0
Expression AtlasA0A0P0W652-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g02730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g02730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116990.0AK111699.1 Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635918.10.0PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A0P0W6520.0A0A0P0W652_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGLOC_Os04g02730.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP57511213
MonocotsOGMP103222527