PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g02510.1
Common NameLOC4334944, Os04g0115500, OsJ_13566, OSNPB_040115500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 481aa    MW: 50184.4 Da    PI: 9.7629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g02510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05242264223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        C+ Cg++F+  ++L++H+   H
  LOC_Os04g02510.1 242 ACSQCGEVFNKADSLEHHQAIrH 264
                       6******************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280241264IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473241269IPR007087Zinc finger, C2H2
SuperFamilySSF563995.32E-17266477No hitNo description
Gene3DG3DSA:3.90.228.106.7E-4400478IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS  60
GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS RGAPSASAAP VSSSWEQLKS  120
LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS  180
LDRDTTPLTR SSRRAHRAAT SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL  240
CACSQCGEVF NKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI  300
LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD  360
DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA AAAAAQQAGG CRAMLVCRVI  420
AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12641RRRHHHHHNHTKRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.277270.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154568830.0
Expression AtlasQ0JFD1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g02510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g02510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2268520.0EU226852.1 Oryza rufipogon isolate H08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268480.0EU226848.1 Oryza rufipogon isolate H04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268470.0EU226847.1 Oryza rufipogon isolate H03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268390.0EU226839.1 Oryza rufipogon isolate G07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268350.0EU226835.1 Oryza rufipogon isolate G03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268310.0EU226831.1 Oryza sativa Japonica Group isolate F11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268290.0EU226829.1 Oryza sativa Japonica Group isolate F09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268280.0EU226828.1 Oryza sativa Japonica Group isolate F08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268270.0EU226827.1 Oryza sativa Japonica Group isolate F07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268260.0EU226826.1 Oryza sativa Japonica Group isolate F06 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268250.0EU226825.1 Oryza sativa Japonica Group isolate F05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268240.0EU226824.1 Oryza sativa Japonica Group isolate F04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268230.0EU226823.1 Oryza sativa Japonica Group isolate F03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268220.0EU226822.1 Oryza sativa Japonica Group isolate F02 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268190.0EU226819.1 Oryza sativa Japonica Group isolate E11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268170.0EU226817.1 Oryza sativa Japonica Group isolate E09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268150.0EU226815.1 Oryza sativa Japonica Group isolate E07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268130.0EU226813.1 Oryza sativa Japonica Group isolate E05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268120.0EU226812.1 Oryza sativa Japonica Group isolate E04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268110.0EU226811.1 Oryza sativa Japonica Group isolate E03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.10.0PREDICTED: uncharacterized protein LOC4334944
TrEMBLA0A0E0P4K30.0A0A0E0P4K3_ORYRU; Uncharacterized protein
TrEMBLQ0JFD10.0Q0JFD1_ORYSJ; Os04g0115500 protein
STRINGLOC_Os04g02510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-65C2H2-like zinc finger protein