PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g63810.1
Common NameLOC4334831, Os03g0855100, Os03g63810, OsJ_13422, OSNPB_030855100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 388aa    MW: 41697.7 Da    PI: 7.2789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g63810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31199257259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY  eHnh+
  LOC_Os03g63810.1 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYAAEHNHP 257
                       699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.017193259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-30196259IPR003657WRKY domain
SuperFamilySSF1182902.75E-26197259IPR003657WRKY domain
SMARTSM007741.8E-37198258IPR003657WRKY domain
PfamPF031061.1E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPMPQAPHQ  60
YYPAPQITIP YHHHHHGELR RPTTIAYTDA PVPFETAGPP STVVDSYHHL TPGDAGYGMP  120
RPLALQISQH ALCGGGDVVM GGGGAGAADD GEEAIRISPL TPSAHHQMMK RKNEVKKVVC  180
IPAPPATSSR GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR  240
SDPNMLVITY AAEHNHPWPM QRNVLAGYAR SHHSTHATAS SSRHKQQQQQ QTNQLQPALI  300
TSSSSSSSSP FNLYADVVLG GQQANMMMTT EGAGAGLGIQ PSAADEVFAE LEELEPDNPT  360
MINANMQVYS TTSRPGVSSY DHQWHKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-171972591677Probable WRKY transcription factor 4
2lex_A5e-171972591677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329950040.0
Expression AtlasQ84T64-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g63810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g63810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097950.0AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630180.10.0PREDICTED: uncharacterized protein LOC4334831
SwissprotO647474e-56WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0E0P4340.0A0A0E0P434_ORYRU; Uncharacterized protein
TrEMBLB8ANR20.0B8ANR2_ORYSI; Putative uncharacterized protein
TrEMBLQ84T640.0Q84T64_ORYSJ; Os03g0855100 protein
STRINGBGIOSGA013972-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g63810.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-54WRKY DNA-binding protein 35