PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g62660.2
Common NameOsJ_13332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 736aa    MW: 83418.6 Da    PI: 6.0331
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g62660.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.42.4e-1842126191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g  +e+        + r++ +t+C+a+++ ++++dg  ++++++leHnH+l+p
  LOC_Os03g62660.2  42 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGDGKEDACY-----QARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNP 126
                       6*****************9998.6777****************9999.....999*********************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1642126IPR004330FAR1 DNA binding domain
PfamPF105513.0E-26229321IPR018289MULE transposase domain
PROSITE profilePS509669.285510546IPR007527Zinc finger, SWIM-type
SMARTSM005750.002521548IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MVDAAAAAAE CGELDGTDAM AYGDDRTPRD GMVFKSYEEV LNFYKRYALR TGFGVCVKKS  60
SFTKAGLCRR LVLVCNKWGD GKEDACYQAR PTAKTNCQAT VVARLWSDGL LHLMDVNLEH  120
NHALNPSAAR FLRCYKTLPS GMSKDLVVRA ARGECSTSGD IEVPIFDDWG RLKIGEDDVA  180
AINGFFADMQ AKQANFFYLM DFYGEGHLRS VFWADSRSRA AYQYFNDAVW IDTTCLRNRF  240
DTPLVLFLGV NHHGELVLLG CGLFSDESTE SFLWLLKSWL TCMKGWPPNA IVTDDCAAIK  300
AAVREVFPNA RHRISDWHVL RSISEKLGES AQFEGMKTEL ETVIYDSLKD DEFEARWNNL  360
ISRFGLQDNE WITFLYENRH FWVPAFLKDT FWAGLSTVNH HESPNAFFED SINPETKLVT  420
FLSSYVNLLQ NKYKMEEDDD LESLSRSRVL VSKFPMEEQL SRLYTFKMFT KLQNELNATM  480
NCEVQLDDST SSIVVIDLAE SSGEMVNKKY EVVHCMETDR MECNCGLFQF SGIVCRHTLS  540
VLKCQHVFDI PPCYVLNRWR NDFKQLHALD NPWKDLVTSN HIERYDYVSL QCLRLVEIGA  600
SSDEKHQHAL KLIRDIRRTL LDDNLCRELE QKLTPSERAI NGDSHMQAGS SEGGPAKKRR  660
GRPPKKSKDT NVESVSNQYA HKDSLLVSSD VSQKDAFHSS STASNLGTHV RTNGVVDLMV  720
VIMIDAGFCS VHCLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.173610.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329803880.0
Expression AtlasA3APM9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g62660.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g62660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703640.0AK070364.1 Oryza sativa Japonica Group cDNA clone:J023050I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629688.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629689.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629690.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA2XNY40.0A2XNY4_ORYSI; Putative uncharacterized protein
TrEMBLA3APM90.0A3APM9_ORYSJ; Uncharacterized protein
STRINGBGIOSGA013920-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-113FAR1-related sequence 8