PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g62230.1
Common NameLOC9267218, Os03g0838800, OSJNBa0042I09.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 386aa    MW: 41923.8 Da    PI: 6.6026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g62230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.8e-07165186223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C+ Cgk F+r  nL+ H+r H
  LOC_Os03g62230.1 165 FCGVCGKGFKRDANLRMHMRGH 186
                       6*******************98 PP

2zf-C2H211.50.00092289303620
                       TTEEESSHHHHHHHH CS
           zf-C2H2   6 CgksFsrksnLkrHi 20 
                       Cg+sFsrk+ L  H 
  LOC_Os03g62230.1 289 CGTSFSRKDKLFAHV 303
                       **************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-5162189No hitNo description
PROSITE profilePS5015711.697164191IPR007087Zinc finger, C2H2
SMARTSM003550.011164186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5166190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM0035539219252IPR015880Zinc finger, C2H2-like
SMARTSM0035531257279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMMSSSADHF SNNNNNQAMY LEQDEDFSQM IMELCDFDAS STTQARHGGE AAAAAAGNAR  60
AVLTYLTFLE QKIGHLRGII SSTPNPPPQI VAAELSCIVV QLVSISKNLA AARRGGDDAD  120
ADAKHDGSSD ADEGADGDGE RAPPRGSYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR  180
MHMRGHGEEY KSAAALAKPG GSPSRSPAAA DAAARRRFYS CPYVGCKRNR EHKSFQPLKT  240
PTCVKNHYRR SHCDKSFTCR RCNVKRFSVV ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF  300
AHVAIFDGHS PALPPEDYDD DAASGQLPHA AGEAVGRTVD TNRFFSDGLM IKGSMEDERG  360
SLSPMGLDYC EFDGIDLFAA AAFDF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.758210.0callus| flower| panicle| stem
Os.990990.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567642200.0
Expression AtlasQ851N2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g62230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g62230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044870.0AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK2876050.0AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630047.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ9C8N51e-101STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLQ851N20.0Q851N2_ORYSJ; Os03g0838800 protein
STRINGLOC_Os03g62230.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-94C2H2 family protein