PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g61249.1
Common NameLOC107280343, LOC107280344, OsJ_13208, OSJNBa0010E04.16, OSJNBa0010E04.21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 317aa    MW: 33994.6 Da    PI: 4.429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g61249.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM644.5e-2091541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....s 80 
                       l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra+      +
  LOC_Os03g61249.1   9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSANPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggE 100
                       579************************998.88**************7335666655557779*****9875544115567777654444447 PP

               NAM  81 gyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                       ++Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  LOC_Os03g61249.1 101 SVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 154
                       78********************99999966677766889999999*******76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-327173IPR003441NAC domain
PROSITE profilePS5100528.9779173IPR003441NAC domain
PfamPF023654.3E-1211153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAN PAELVGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVGGGGGGE SVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESSSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE  180
ARTAAAAKSA DSPCSGSKRK ADDGADHPEA PPSARPRQEE AGSEQPAILP ELDLDALLSA  240
PMDDSLGVEF DTATTEQYMR YLMNDEPLPW APTMEVAGGG DEFIETTNGP CMGEEEIIQR  300
LASGETLDDI LGSNPN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8RV35
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g61249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g61249
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0966870.0AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.10.0PREDICTED: NAC domain-containing protein 71-like
RefseqXP_015629670.10.0PREDICTED: NAC domain-containing protein 71-like
TrEMBLQ8RV350.0Q8RV35_ORYSJ; No apical meristem protein
STRINGLOC_Os03g61249.10.0(Oryza sativa Japonica Group)
STRINGLOC_Os03g61319.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1189925
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-09NAC family protein