PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g59670.1
Common NameLOC4334540, Os03g0811400, OSJNBb0033J23.9, OSNPB_030811400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 269aa    MW: 27912.8 Da    PI: 6.1597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g59670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1169115354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  LOC_Os03g59670.1  69 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKASLLAKAVERVRDL 115
                       78************************98.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.7766115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1169121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1069118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-969115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-772121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFPVEVAAAA AAAGRMQGEA VVPMMLPPFF MDSGIWPAAA GVVDVAASAE EEAAAAAAAA  60
QDRALAASRN HREAEKRRRE RIKSHLDRLR AVLACDPKID KASLLAKAVE RVRDLKQRMA  120
GIGEAAPAHL FPTEHDEIVV LASGGGGVGG AGGAAAVFEA SVCCDDRCDL LPELIETLRA  180
LRLRTLRAEM ATLGGRVRNV LVLARDAGGA GEGGDGDDDR AGYSAVSNDG GDFLKEALRA  240
LVERPGAAAG DRPKRRRVVS DMNMQAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.800690.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XZF8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g59670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g59670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375070.0AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629146.10.0PREDICTED: transcription factor bHLH106
TrEMBLQ7XZF80.0Q7XZF8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g59670.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-20bHLH family protein