PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g56950.6
Common NameLOC4334324
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 287aa    MW: 30587.5 Da    PI: 6.7171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g56950.6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.6e-18235281455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  LOC_Os03g56950.6 235 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 281
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.11E-17226285No hitNo description
SuperFamilySSF474591.07E-19229285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15235281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-21235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDGNARSAAN QTKQIVTDNE LVELLWHNGG VVAQPQAAQA RVVSSSGRGQ SASVLTGDDT  60
ETAAWFPDTL DDALEKDLYT QLWRSVTGDA FPAAAAAGPS SHHAPPPDLP PPAARPPMRS  120
GIGSSWTGDI CSAFCGSNHI PETAAQRCRD AGAALPPERP RRSSTHDGAG TSSSGGSGSN  180
FGASGLPSES ASAHKRKGRE DSDSRSEDAE CEATEETKSS SRRYGSKRRT RAAEVHNLSE  240
RRRRDRINEK MRALQELIPH CNKTDKASIL DEAIEYLKSL QMQVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KRRTRAAEVHNLSERRRR
2239244ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.51780.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10CH6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g56950.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g56950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8290130.0CT829013.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222D24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633319.10.0PREDICTED: transcription factor PIF5 isoform X1
RefseqXP_015633322.10.0PREDICTED: transcription factor PIF5 isoform X3
RefseqXP_015633324.10.0PREDICTED: transcription factor PIF5 isoform X5
TrEMBLQ10CH60.0Q10CH6_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g56950.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-29phytochrome interacting factor 3