PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g56950.3
Common NameOs03g0782500, OSNPB_030782500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 411aa    MW: 43854.9 Da    PI: 6.6986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g56950.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.5e-18224270455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  LOC_Os03g56950.3 224 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 270
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.71E-18215274No hitNo description
SuperFamilySSF474592.09E-21218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-15224270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-22224279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAICSTDNEL VELLWHNGGV VAQPQAAQAR VVSSSGRGQS ASVLTGDDTE TAAWFPDTLD  60
DALEKDLYTQ LWRSVTGDAF PAAAAAGPSS HHAPPPDLPP PAARPPMRSG IGSSWTGDIC  120
SAFCGSNHIP ETAAQRCRDA GAALPPERPR RSSTHDGAGT SSSGGSGSNF GASGLPSESA  180
SAHKRKGRED SDSRSEDAEC EATEETKSSS RRYGSKRRTR AAEVHNLSER RRRDRINEKM  240
RALQELIPHC NKTDKASILD EAIEYLKSLQ MQVQIMWMTT GMAPMMFPGA HQFMPPMAVG  300
MNSACMPAAQ GLSHMSRLPY MNHSMPNHIP LNSSPAMNPM NVANQMQNIQ LREASNPFLH  360
PDGWQTVPPQ VSGPYASGPQ VAQQNQIPKA SASTVLPNSG AEQPPTSDGI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215232KRRTRAAEVHNLSERRRR
2228233ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.51780.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10CH5
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g56950.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g56950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056370.0AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633324.10.0PREDICTED: transcription factor PIF5 isoform X5
TrEMBLA0A0E0P2470.0A0A0E0P247_ORYRU; Uncharacterized protein
TrEMBLQ10CH50.0Q10CH5_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g56950.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-32phytochrome interacting factor 3