PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g56140.1
Common NameOs03g0772100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 386aa    MW: 41456.8 Da    PI: 6.9005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g56140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.25e-072993272755
                       HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  27 aeereeLAkklgLterqVkvWFqNrRake 55 
                       + e+  LA+ +gL+++q+++WF N+R ++
  LOC_Os03g56140.1 299 EVEKMTLAQTTGLDQKQISNWFINQRKRH 327
                       567889********************885 PP

2ELK26.81.2e-09208229122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       +LKhqLl KY+g+Lg+L+q Fs
  LOC_Os03g56140.1 208 QLKHQLLMKYGGSLGDLRQAFS 229
                       59*****************776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-2079123IPR005540KNOX1
PfamPF037901.6E-1980119IPR005540KNOX1
SMARTSM011884.7E-5208229IPR005539ELK domain
PROSITE profilePS512139.097208228IPR005539ELK domain
PfamPF037893.8E-9208229IPR005539ELK domain
Gene3DG3DSA:1.10.10.602.0E-21233260IPR009057Homeodomain-like
SMARTSM003890.0031271334IPR001356Homeobox domain
SuperFamilySSF466892.4E-9296336IPR009057Homeodomain-like
PROSITE profilePS500719.993296330IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-21299330IPR009057Homeodomain-like
PfamPF059206.2E-10299326IPR008422Homeobox KN domain
CDDcd000868.15E-8301330No hitNo description
PROSITE patternPS000270305328IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG  60
GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALLAAYLG CKKVGAPPDV LTKLTAVPAA  120
QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMHADEVQGG AGAADPGSRG VLQLDSIADS  180
NCEGTGSSEE EQDTSCPEAE EIDPSDKQLK HQLLMKYGGS LGDLRQAFSK RTKKGKLPKE  240
ARLKLLHWWE LHYDKWPYPS VRTHIYASHL INSTTFFCTK LDLMKMRELL GCTCVYEQEV  300
EKMTLAQTTG LDQKQISNWF INQRKRHWKP TPVAGMTFPT VEAAGGGFRH SGHDGGLAAA  360
AAAAALPLYM GSWPFVVDGM YRLGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.607410.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977225840.0
Expression AtlasC7IZH7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g56140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g56140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927810.0AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630164.10.0PREDICTED: homeobox protein knotted-1-like 9
SwissprotQ10EC60.0KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLC7IZH70.0C7IZH7_ORYSJ; Os03g0772100 protein
STRINGLOC_Os03g56140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-44KNOTTED-like from Arabidopsis thaliana