PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g55550.1
Common NameOsJ_12693, OSJNBa0002J24.23
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 311aa    MW: 34267.3 Da    PI: 7.8069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g55550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102262661055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  LOC_Os03g55550.1 226 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 266
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-13214274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.488216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-7232270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAVDWIWERR RREEEYNHQM SQDELQQPGQ VQWTPAPEEK SEIAVQFFTA PYPCQNGQLD  60
HGEHHALGGI GACSSVHWQP DRGTCYWPPP LSGDGGGGSG SGSSGTGEGS YIGERCYYVG  120
EPDVPIGLNL LVGDNDGAGV VLRDAAPQAK RRTQAGHGGD LGRQKKKARV SDKRNQESMQ  180
SGSCSDNESN CSQVNRRKVD RVAGGGNGKV PARRRSATIA QSLYARRRRE RINGRLRILQ  240
KLVPNGTKVD ISTMLEEAVH YVKFLQLQIK VEVQIVCHDQ MLSSDELWMY APIVYNGMDL  300
GIDLNISPPR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712ERRRRE
2212228RRRSATIAQSLYARRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8W5G3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g55550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g55550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.10.0PREDICTED: transcription factor UNE12-like isoform X1
RefseqXP_015631806.10.0PREDICTED: transcription factor PIF3-like isoform X3
TrEMBLQ8W5G30.0Q8W5G3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g55550.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-34bHLH family protein