PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g50920.1
Common NameLOC9272708, Os03g0718500, OsJ_12364, ZHD11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 239aa    MW: 24295 Da    PI: 8.0118
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g50920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.23.3e-271060457
       ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                       +Y+eC++NhAa+lG++a DGC+E++p+   +g++a+l CaACgCHRnFHR++ 
  LOC_Os03g50920.1 10 EVYRECMRNHAAKLGTYANDGCCEYTPD---DGHPAGLLCAACGCHRNFHRKDF 60
                      68*************************8...789******************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-211159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-221259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-201259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.6191259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.9E-16106182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-27110182IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27120181IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEQQQERPRE VYRECMRNHA AKLGTYANDG CCEYTPDDGH PAGLLCAACG CHRNFHRKDF  60
LDGRATAAAG GAGGAGVGVA PMLPAPGGGG PPGYMHMAAM GGAVGGGGGV DGGGGSGGRR  120
RTRTKFTEEQ KARMLRFAER LGWRMPKREP GRAPGDDEVA RFCREIGVNR QVFKVWMHNH  180
KAGGGGGGGG SGGPGAGGGA QTSSSTTRGG GDVGVGLSPA MGGDGEDDEE VRGSEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-181191881780ZF-HD homeobox family protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10DV5
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g50920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g50920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC0915320.0AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630147.11e-168PREDICTED: zinc-finger homeodomain protein 11
SwissprotA2XLF41e-170ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-170ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0E0GSX51e-168A0A0E0GSX5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P0I41e-168A0A0E0P0I4_ORYRU; Uncharacterized protein
STRINGLOC_Os03g50920.11e-168(Oryza sativa Japonica Group)
STRINGBGIOSGA013464-PA1e-168(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-32homeobox protein 22
Publications ? help Back to Top
  1. Hu W,dePamphilis CW,Ma H
    Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families.
    J Integr Plant Biol, 2008. 50(8): p. 1031-45
    [PMID:18713354]