PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g49880.1
Common NameLOC4333856, Os03g0706500, Os03g49880, OSNPB_030706500, OsTB1, TCP8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 389aa    MW: 41503.9 Da    PI: 7.4258
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g49880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP157.29.2e-491122741136
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++  +++s c e++sss s++ ++++    
  LOC_Os03g49880.1 112 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQhsnp 202
                       589**************************************************************..66667887777777776444444567 PP

               TCP  89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                               k +++aa++k++++ a+++  ++kesrakar+rarert+ek+r+++++
  LOC_Os03g49880.1 203 adrgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 274
                       88899999999999*********77777777**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.0E-45114270IPR005333Transcription factor, TCP
PROSITE profilePS5136934.132115173IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.264250267IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA  60
TIASPSPAMH PFMDLELEPH GQQLAAAEED GAGGQGVDAG VPFGVDGAAA AAAARKDRHS  120
KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS  180
VCEEDGSSSL SVDGKQQQHS NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR  240
LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS  300
NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS  360
GSYYLQQQHQ QDQWELGGVV YANSRHYC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.130120.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329922920.0
Expression AtlasQ8LN68-
Function -- GeneRIF ? help Back to Top
  1. results demonstrate that both mTB1 and OsTB1 moderately regulate the tiller development in rice
    [PMID: 21912860]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g49880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g49880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0917750.0AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAB0883430.0AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds.
GenBankAK1070830.0AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630237.10.0PREDICTED: transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI21e-104TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLQ7Y1X70.0Q7Y1X7_ORYSI; Teosinte-branching 1
TrEMBLQ8LN680.0Q8LN68_ORYSJ; Os03g0706500 protein
STRINGLOC_Os03g49880.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1265045
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-22TCP domain protein 12
Publications ? help Back to Top
  1. Choi MS, et al.
    Teosinte Branched 1 modulates tillering in rice plants.
    Plant Cell Rep., 2012. 31(1): p. 57-65
    [PMID:21912860]