PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g49170.3
Common NameLOC4333810, Os03g0698800, OSJNBb0017F17.19
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 750aa    MW: 79374.4 Da    PI: 6.9565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g49170.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07311331526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  LOC_Os03g49170.3 311 PCPDFRK-GVCRRGDMCEYAHG 331
                       8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127969.2E-1193162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01993123IPR002110Ankyrin repeat
SuperFamilySSF484032.18E-1593171IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1793171IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46793168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.039128160IPR002110Ankyrin repeat
PROSITE profilePS5008812.876128163IPR002110Ankyrin repeat
PRINTSPR014157.3E-5129144IPR002110Ankyrin repeat
PRINTSPR014157.3E-5147161IPR002110Ankyrin repeat
SMARTSM003561.1E-5306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4310333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375311333IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4311331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4339369IPR000571Zinc finger, CCCH-type
SMARTSM0035637341364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MNGTPISASA AAGVDGVGAA VALAAATKKS AAAAAAVAEM AKTLTVDTDD AFAGLLELAA  60
DDDAEGLRRA LERAPPAAAD EAGLWYGRRK VLEHRTPLMV AATYGSLAVL RLLLSLPSVD  120
VNRRCGSDGT TALHCAASGG SPSCVEAVKL LLAAGADADA TDASGYRPAD VISVPPKMFD  180
AKIALQDLLG CPKAGHGVLR VVTRAANSML SPVSSPTAED ARSPSAAVMM TTKFADLPRV  240
VTSEKKEYPV DPSLPDIKNS IYASDEFRMY SFKIRPCSRA YSHDWTECPF VHPGENARRR  300
DPRKYHYSCV PCPDFRKGVC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF  360
AHTTDELRPL YVSTGSAVPS PRASATATME MAAAMGLMPG SPSSVSAVMS PFTPPMSPSG  420
NGMPPSLGWQ QPNVPTLHLP GSSLQSSRLR TSLSARDMPA DDYSLMQDID SQLINDLCYS  480
RIGSSTGNHT SRTKSLNPSN LDDLFSAEMV SSPRYSNADQ GGMFSPSHKA AFLNQFQQQQ  540
QALLSPINTV FSPKSVDNQQ LPSHSSLLQA SLGISSPGRM SPRCVESGSP MNSHLAAALA  600
QREKQQQTMR SLSSRDLGPS AARASGVVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR  660
SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPSV SNGEGPSLNA  720
PLDGHDQAAV IGALLEQMQL DQHIGSLAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.742920.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154547620.0
Expression AtlasQ10EL1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g49170.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g49170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0973680.0AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632054.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0NZZ60.0A0A0E0NZZ6_ORYRU; Uncharacterized protein
TrEMBLA2XL030.0A2XL03_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013387-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g49170.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]