PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g49132.1
Common NameOs03g0698300, OSJNBb0017F17.23, OSNPB_030698300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 477aa    MW: 49312.6 Da    PI: 4.6986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g49132.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014247267121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       ++C++Cg++F ++  L  H  
  LOC_Os03g49132.1 247 FVCSICGRCFGSHQALGGHVL 267
                       89********99998877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-7245269No hitNo description
PROSITE profilePS501579.411247274IPR007087Zinc finger, C2H2
SMARTSM003550.13247269IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-4247265IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-7401428No hitNo description
PROSITE profilePS5015710.076406433IPR007087Zinc finger, C2H2
SMARTSM003550.13406428IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-7406430IPR007087Zinc finger, C2H2
PROSITE patternPS000280408428IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR  60
DDAEADAGAE GTGCCKRKRR VVDDDDDDDG FSPRQPALLD GSGGQAAEEE EDDEGSSDDD  120
DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI  180
AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAEAA  240
ERASKRFVCS ICGRCFGSHQ ALGGHVLGHK KKAKNAAIAA AARDATTTAV TEAVAPASQR  300
QSFFAADING QDERGCDGAE GSRYDDDEEK SPVVVDDVAA CHDADVDESR GHGKAESASA  360
IDAGGDAGNN KVAHGDGEEN DKIAGVVVAS SHDGDSDVGK MKIVQHKCDE CGKVCLTGQA  420
LGGHMSKHRR TRPAANGGEG PATATVADGG AQTVRLIGDD VCLQRAVAIA GFHSAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ851S0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g49132.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g49132
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0973680.0AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ851S00.0Q851S0_ORYSJ; Os03g0698300 protein
STRINGLOC_Os03g49132.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1638077