PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g46790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 266aa    MW: 28748.9 Da    PI: 5.1677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g46790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.2e-16116161555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  LOC_Os03g46790.1 116 HVVAERKRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 161
                       8899**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.094111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-18114177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19115172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-16116165No hitNo description
PfamPF000103.2E-13116161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDDSSLFLHW AVSTLQHQHP AAVAVVADDD ATFFSFQELC DTEEVVVVPV QEEVITEAHG  60
GGASRIGLAV AVDEHGGWSR SPNPGARPPS GGCGSNNLPL MSWDFSAASV AVQLEHVVAE  120
RKRREKINQR FMELSAVIPK LKKMDKATIL SDAASYIREL QEKLKALEEQ AAARVTEAAM  180
ATPSPARAMN HLPVPPEIEV RCSPTNNVVM VRIHCENGEG VIVRILAEVE EIHLRIINAN  240
VMPFLDQGAT MIITIAAKAS SSLLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERKRRE
2120125RKRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923993e-40
Expression AtlasQ10FE3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g46790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g46790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467180.0AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629610.11e-167PREDICTED: transcription factor bHLH19-like
TrEMBLQ10FE30.0Q10FE3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGLOC_Os03g46790.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.25e-25bHLH family protein