PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g45300.1
Common NameLOC4333612, Os03g0655600, OSJNBb0023J24.3, OSNPB_030655600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1067aa    MW: 115734 Da    PI: 5.5348
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g45300.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.91.3e-3183184291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                       fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+            + + rrtra+tr+gCka+++vkk+++g+w vtkle
  LOC_Os03g45300.1  83 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLE 175
                       ********************************************************99999******************************** PP

              FAR1  83 leHnHelap 91 
                       + HnH+l+p
  LOC_Os03g45300.1 176 TAHNHPLVP 184
                       ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2983184IPR004330FAR1 DNA binding domain
PfamPF105518.9E-22302392IPR018289MULE transposase domain
PROSITE profilePS5096610.027568616IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-8590613IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7591618IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MERGGGGGGG GGGGVVGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA  60
GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG  120
FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH  180
PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPMP QTSVLQVVPH  240
YTRDGIGDHA RVILDYVKRM QAEDPAFFYA MQFIDGHPVG NIFWADARAR MAYKHFGDAV  300
FLDDYCKRNK YQLPLVAFTG VNHHCQPVLF GCAIIGDNSE ASFVWLFETL LLAMSGHHPD  360
SLTTEHDSAI QLAALKVLPR TRHRFCRWHI LNETHDKLSH LSDEFPSLHE ELVNCINMPE  420
TIDEFEVNFK ALISKVGPGN SEWLYSVYNC RQHWVPVYLR DTFFGDESSK EECASRSSFF  480
DGYISAKTDP QSFIQQYEKA LDCCYEKEVK EEFETKYSLP EIKTSSPIEK QGADLYTRSM  540
FLKFQQELVD ASVSSLEVMK EDGKSRIYKV TKSAGSEKPH MVEFNSFGSS ATCSCQMFEH  600
LGIVCRHILT VFGTQGVSSL PSQYIVKRWT KYAMERSPDK KIDEVSKVNE PKEEQKSGAE  660
DGEQSQTWRY NSLCREALRY AEEGASSVEV YIVAMQALQE AANKVNMAKR GIGQVAPNAP  720
LAVMPIAAQL PAEGFRNVPE ISFNQRKKRK RNSNNKTTEN SSNQLMYLQQ PVNFLFVAPG  780
TSSGPQGPSQ IVAAVPVSSS APHGQTSSAN HPSDGNTTSC SVAAQKNSDL SNYSGSAPSL  840
GNVVPEGEIK SSGFASQIKE SHELSQGNGN KGNNVNMASS TSSPQLVTVP VGLCLPSMDS  900
SKISADAINS TNSGSMISNG NVSFGLCQSQ STNADPRSTP EGSSIRAAAI AAGARIASPS  960
DAASIIKAAQ SKGAIHIRPG EGVPNYLKPL APQPLSSLPP GSIPNSVHPS SSHAQPGQCS  1020
FGDSAAAKDA IFGSTDSSDD DEYDEDDDTD DNDEDEGITG DEVEQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1745750RKKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.170670.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379904010.0
Expression AtlasQ6AT58-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g45300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g45300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207780.0AK120778.1 Oryza sativa Japonica Group cDNA clone:J023009J07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631605.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLQ6AT580.0Q6AT58_ORYSJ; Os03g0655600 protein
STRINGLOC_Os03g45300.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-166FAR1-related sequence 5