PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g45194.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 557aa    MW: 60876.6 Da    PI: 7.1707
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g45194.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.91.5e-20388442455
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                       lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v +Lt +++kSHLQkYR 
  LOC_Os03g45194.1 388 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTSLTTHNIKSHLQKYRE 442
                       89************************77722256678999**************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517354.11E-4175305IPR016040NAD(P)-binding domain
PRINTSPR000817.4E-147592IPR002347Short-chain dehydrogenase/reductase SDR
PfamPF001061.1E-3876288IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7204.3E-4876293IPR016040NAD(P)-binding domain
CDDcd052331.81E-4676320No hitNo description
PROSITE patternPS000610232260IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000817.4E-14245264IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000817.4E-14269286IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466894.12E-12382444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-19384443IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-16388442IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010304Biological ProcessPSII associated light-harvesting complex II catabolic process
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAATAAYLPL RAQAQVGLAP LRPSGSAAAG ARLPGRTARR RLAARGGPEA AGIRAEAVPG  60
GGGVARRAAM VPPYNVLITG STKGIGYALA KEFLKAGDNV VICSRSAERV ESAVTDLKKE  120
FGEQHVWGIV CDVREGKDVK ALVDFARDKM KYIDIWNHKK AGFSPYLCVP LAQINNAGSN  180
AYSYKPLVET SDEALMEVIT TNTLGLMICC REAINMMRNQ PRGGHIFNID GAGSDGRPTP  240
RFAAYGATKR SVVHLTKSLQ AELQMNEVNN VMVHNLSPGM VTTDLLMSGA TTKQAKFFIN  300
ILAEPANVVA DYLVPNIRAI PTNQSMKPTY IRFLTGLKAY SRIFSRIAFG ARRNKIMSNS  360
QPAQEDDCMS SILVSRLIRA MQPTRSYLRW SDDLHKMFVE AVAYHGGPYE AKPTAVKETM  420
QAMGVTSLTT HNIKSHLQKY RESFSSGVGS LHDHDLLRTT SPSKEALDLA SEMVRDNDAA  480
MAEIEMLNDL LLDHDIEMVE TSFSVDDLQM MERELMSEIK LIEHNFEISE SALDEYMDDL  540
ANYAFDLTGP ANSSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuy_A6e-156328513215Short chain dehydrogenase/reductase
4iuy_B6e-156328513215Short chain dehydrogenase/reductase
4iuy_C6e-156328513215Short chain dehydrogenase/reductase
4iuy_D6e-156328513215Short chain dehydrogenase/reductase
4iuy_E6e-156328513215Short chain dehydrogenase/reductase
4iuy_F6e-156328513215Short chain dehydrogenase/reductase
4iuy_G6e-156328513215Short chain dehydrogenase/reductase
4iuy_H6e-156328513215Short chain dehydrogenase/reductase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984430.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g45194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g45194
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8416590.0CT841659.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G14, full insert sequence.
GenBankAB2550260.0AB255026.1 Oryza sativa Japonica Group NOL1 mRNA for short-chain dehydrogenase/reductase NOL1, complete cds.
GenBankAK2878690.0AK287869.1 Oryza sativa Japonica Group cDNA, clone: J065203M24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464146.10.0hypothetical protein SORBIDRAFT_01g013080
SwissprotQ84ST40.0NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLI1PDY90.0I1PDY9_ORYGL; Uncharacterized protein
STRINGLOC_Os03g45194.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-12G2-like family protein