PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g44710.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 123aa    MW: 13833.9 Da    PI: 7.9372
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g44710.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY121.71.1e-3741092114
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +++ ++e+vCyv+CnfCnti+avsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s+
  LOC_Os03g44710.3   4 QIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSR 88 
                       67889*******************************************************9........899********************* PP

             YABBY  95 svssekl.senedeevprvpp 114
                       + ++ ++ s+n++e++ +v  
  LOC_Os03g44710.3  89 YGRVPMMfSKNDTEHMLHVRL 109
                       ***99988999****998654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-30991IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRLG AFPEHPFRVR  120
LP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.169370.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172347010.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g44710.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g44710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankAK0702580.0AK070258.1 Oryza sativa Japonica Group cDNA clone:J023044A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628574.18e-76PREDICTED: protein YABBY 2 isoform X1
RefseqXP_015628575.18e-76PREDICTED: protein YABBY 2 isoform X1
SwissprotQ10FZ71e-77YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0E0GR304e-75A0A0E0GR30_ORYNI; Uncharacterized protein
TrEMBLB7EHY19e-76B7EHY1_ORYSJ; Uncharacterized protein
TrEMBLB8ANI49e-76B8ANI4_ORYSI; Putative uncharacterized protein
STRINGLOC_Os03g44710.12e-75(Oryza sativa Japonica Group)
STRINGBGIOSGA013223-PA2e-75(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-19YABBY family protein