PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g44710.2
Common NameFIL2, LOC4333584, Os03g0650000, YAB2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 187aa    MW: 21163.1 Da    PI: 9.24
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g44710.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY257.42.2e-7941612170
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +++ ++e+vCyv+CnfCnti+avsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s+
  LOC_Os03g44710.2   4 QIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSR 88 
                       67889*******************************************************9........899********************* PP

             YABBY  95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + ++ ++ s+n++e++ +    +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  LOC_Os03g44710.2  89 YGRVPMMfSKNDTEHMLH----VRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
                       ***99988999*****98....9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.8E-739161IPR006780YABBY protein
SuperFamilySSF470951.09E-8101155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5107155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY  120
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESSKKL DEAIGAPSPQ  180
KVQRLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.169370.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172347010.0
Expression AtlasQ10FZ7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g44710.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g44710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628574.11e-139PREDICTED: protein YABBY 2 isoform X1
RefseqXP_015628575.11e-139PREDICTED: protein YABBY 2 isoform X1
SwissprotQ10FZ71e-141YAB2_ORYSJ; Protein YABBY 2
TrEMBLB7EHY11e-139B7EHY1_ORYSJ; Uncharacterized protein
TrEMBLB8ANI41e-139B8ANI4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013223-PA1e-139(Oryza sativa Indica Group)
STRINGLOC_Os03g44710.11e-139(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-56YABBY family protein
Publications ? help Back to Top
  1. Sawa S, et al.
    FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains.
    Genes Dev., 1999. 13(9): p. 1079-88
    [PMID:10323860]
  2. Toriba T, et al.
    Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
    Mol. Genet. Genomics, 2007. 277(5): p. 457-68
    [PMID:17216490]