PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g43930.1
Common NameB1394A07.10, HOX32, LOC4333544, Os03g0640800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 863aa    MW: 93747.6 Da    PI: 6.6202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g43930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-183390457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  LOC_Os03g43930.1 33 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 90
                      6789****************************************************97 PP

2START174.47.2e-551813882204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++
  LOC_Os03g43930.1 181 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIE 272
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l
  LOC_Os03g43930.1 273 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 365
                       ************999****************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s  + ++k++ a+l++ +
  LOC_Os03g43930.1 366 RPLYESPKILAQKMTIAALRHIR 388
                       ******************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2562791IPR001356Homeobox domain
SMARTSM003892.7E-152995IPR001356Homeobox domain
SuperFamilySSF466891.5E-163194IPR009057Homeodomain-like
CDDcd000865.37E-163292No hitNo description
PfamPF000461.0E-153390IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-183490IPR009057Homeodomain-like
CDDcd146861.83E-684123No hitNo description
PROSITE profilePS5084827.274171371IPR002913START domain
CDDcd088752.04E-69175391No hitNo description
Gene3DG3DSA:3.30.530.204.0E-24179371IPR023393START-like domain
SMARTSM002342.3E-47180390IPR002913START domain
PfamPF018521.2E-52181388IPR002913START domain
SuperFamilySSF559615.49E-39181391No hitNo description
SuperFamilySSF559617.55E-5428512No hitNo description
SuperFamilySSF559617.55E-5542615No hitNo description
PfamPF086702.2E-49716861IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ  60
QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK  120
QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA  180
IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV  240
AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE  300
DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS  360
VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY GGGRQPAVLR TFSQRLSRGF  420
NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML  480
LQNVPPALLV RFLREHRSEW ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT  540
LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD  600
APLLPSGFRV IPLDGKTDAP SATRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF  660
QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG GQIETKNPPG SPEAHTLARW  720
IGRSYRFHTG ADLLRTDSQS TDSSLKAMWQ HSDSIMCCSL KVSVAAPVFT FANQAGLDML  780
ETTLIALQDI SLEKILDDDG RKALCTEFPK IMQQGFAYLP GGVCVSSMGR PVSYEQAVAW  840
KVLSDDDTPH CLAFMFVNWS FV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.141260.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329884930.0
Expression AtlasQ6AST1-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g43930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g43930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLI1PDT70.0I1PDT7_ORYGL; Uncharacterized protein
STRINGLOC_Os03g43930.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]