PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g43810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 495aa    MW: 52189.3 Da    PI: 6.5118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g43810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.3e-17322368455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  LOC_Os03g43810.1 322 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 368
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-21316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-17321372No hitNo description
Gene3DG3DSA:4.10.280.108.9E-21322376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAAVQE  60
DEAGLWFPFA LADSLEKDIF SDLFYEAPVA ATAEAAPAGP GAGADGEGKT CKGDAAMAEE  120
ERGGPGAASE APRELMPPPK STNASCSRQQ TMSLADGGDN AGDLSELVRA RRSSGGAARR  180
KAEAGGGGGG ASSSMLSAIG SSICGSNQVQ VQQRTASEPG RRGAPPSAVG SANAIPCGGR  240
DHGHGHEATT VASSSGRSNC CFGTTTTTEP TSTSNRSSKR KRLDTTEDSE SPSEDAESES  300
AALARKPPAK MTTARRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK TDKASMLDEA  360
IEYLKSLQLQ LQMMWMGSGM APPVMFPGVH QYLPRMGVGM GAAAAAMPRM PFMAAPQPVV  420
PTPPVNHLDL GVNHLQPPPT QGVGYYPLGA KAVQQQQNPP LHVPNGSIMP PPENAPNTGS  480
GMGSFYFYFY FSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.192290.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329705230.0
Expression AtlasQ10G90-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g43810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g43810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4878300.0AJ487830.1 Oryza sativa mRNA for BP-5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982351.10.0PREDICTED: transcription factor PIF1-like isoform X3
TrEMBLQ10G900.0Q10G90_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g43810.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-33phytochrome interacting factor 3