PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g37900.1
Common NameOSJNBa0008D12.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 138aa    MW: 15192.7 Da    PI: 8.2466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g37900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS61.91.3e-1938134194
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                       lv+ L++cA+ vs+g++e+a  +Larl e+as +g  p++R+aayf e L  r++r++++++++ pp+e +++    ++ ++al++++ ++Pi
  LOC_Os03g37900.1  38 LVRMLTACADSVSAGNHEAAIYYLARLCEMASLAGpMPIHRVAAYFIEVLTLRVVRMWPHMFNISPPRELTNDAfsGDDDAMALRILNTITPI 130
                       6789*******************************99*********************************988798999************** PP

              GRAS  91 lkfs 94 
                       l ++
  LOC_Os03g37900.1 131 LLLG 134
                       9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.82712137IPR005202Transcription factor GRAS
PfamPF035144.3E-1738134IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGAGRRRRQK MMPPPLSNFD ARNGVPTPGQ AEQETMELVR MLTACADSVS AGNHEAAIYY  60
LARLCEMASL AGPMPIHRVA AYFIEVLTLR VVRMWPHMFN ISPPRELTND AFSGDDDAMA  120
LRILNTITPI LLLGKHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891101e-104callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661351e-104
Expression AtlasQ75G81-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g37900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g37900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1464680.0AC146468.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642886.18e-51PREDICTED: scarecrow-like protein 28
RefseqXP_015642887.18e-51PREDICTED: scarecrow-like protein 28
TrEMBLA0A0E0NXF97e-99A0A0E0NXF9_ORYRU; Uncharacterized protein
TrEMBLQ75G817e-99Q75G81_ORYSJ; Scarecrow transcription factor family protein, putative
STRINGLOC_Os03g37900.12e-98(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2404766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-24GRAS family protein