PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g32230.1
Common NameLOC4333197, Os03g0437200, OSJNBa0054H04.4, OSJNBb0034P05.8, OSNPB_030437200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 221aa    MW: 22803.9 Da    PI: 8.6546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g32230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000247395123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F +   L  H ++H
  LOC_Os03g32230.1 73 FRCTVCGKAFASYQALGGHKSSH 95
                      89**********99999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.1E-137297IPR007087Zinc finger, C2H2
SMARTSM003550.0227395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82473100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-87395No hitNo description
Gene3DG3DSA:3.30.160.608.6E-47396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-8130157No hitNo description
SMARTSM003550.44135157IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-11135158IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTAALQALLD PTALSLGLPT PAINKEEYLA ICLAALACTR AGKALVGVGG QQQVQACNKW  60
LCPAPAAPEE LRFRCTVCGK AFASYQALGG HKSSHRKPPS PGDHYGAAAA AQQLASAGDS  120
KEDSASSAAG STGPHRCTIC RRSFATGQAL GGHKRCHYWD GTSVSVSVSA SASAASSAVR  180
NFDLNLMPLP ESTAAAGIKR WAEEEEVQSP LPVKKLRMSN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.509700.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172220380.0
Expression AtlasQ75KE5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g32230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g32230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1478030.0AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankCT8304150.0CT830415.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104A19, full insert sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1068870.0AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK0598390.0AK059839.1 Oryza sativa Japonica Group cDNA clone:006-206-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629109.11e-160PREDICTED: zinc finger protein 1
TrEMBLA0A0D9Z9C21e-160A0A0D9Z9C2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NWZ21e-160A0A0E0NWZ2_ORYRU; Uncharacterized protein
TrEMBLA2XIC81e-160A2XIC8_ORYSI; Putative uncharacterized protein
TrEMBLQ75KE51e-160Q75KE5_ORYSJ; C2H2 transcription factor
STRINGBGIOSGA010468-PA1e-160(Oryza sativa Indica Group)
STRINGLOC_Os03g32230.11e-160(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-29salt tolerance zinc finger