PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g32220.1
Common NameLOC107277732, LOC4333196, Os03g0437100, Os11g0340477, OsJ_11394, OSJNBa0054H04.3, OSJNBb0034P05.7, OSNPB_030437100, OSNPB_110340477
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 201aa    MW: 21350.2 Da    PI: 8.8637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g32220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-054870123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F+++  L  H  +H
  LOC_Os03g32220.1 48 FRCSVCGKAFPSHQALGGHKASH 70
                      89*************99998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-124772IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-94870No hitNo description
PROSITE profilePS5015710.6584875IPR007087Zinc finger, C2H2
SMARTSM003550.00684870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-9104131No hitNo description
PfamPF139123.2E-11108132IPR007087Zinc finger, C2H2
SMARTSM003550.6109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVTNMTHDDY VSLCLMALAQ AGVGGQWPAQ KQQIDMAPPA PERELLRFRC SVCGKAFPSH  60
QALGGHKASH RKPPTAALPM HVIDAPPPPS AEDTASSSTT TTTSGGGRHR CSVCHRTFAT  120
GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL KPVPETVAAG VRRWGEEEEV  180
QSPLPFKKRR LSSPSLELNL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.559210.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166381870.0
Expression AtlasQ75KE6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g32220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g32220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1478030.0AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1068870.0AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK1089970.0AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616557.11e-147PREDICTED: zinc finger protein 1
RefseqXP_015630035.11e-147PREDICTED: zinc finger protein 1-like
TrEMBLA0A0E0NWZ11e-147A0A0E0NWZ1_ORYRU; Uncharacterized protein
TrEMBLA2XIC51e-147A2XIC5_ORYSI; Putative uncharacterized protein
TrEMBLQ75KE61e-147Q75KE6_ORYSJ; C2H2 type zinc finger containing protein
STRINGBGIOSGA010469-PA1e-147(Oryza sativa Indica Group)
STRINGBGIOSGA010470-PA1e-147(Oryza sativa Indica Group)
STRINGLOC_Os03g32220.11e-147(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.15e-31zinc finger of Arabidopsis thaliana 6