PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g26210.3
Common NameLOC4332972, Os03g0379300, OsJ_11051, OSJNBa0013O08.3, OSNPB_030379300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 253aa    MW: 27890.5 Da    PI: 5.7676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g26210.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000133786154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r++ ++erE+  R ++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  LOC_Os03g26210.3 37 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 86
                      678899*********************997....57788899999888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1134105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-934106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.2643686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVPSERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG  60
NMLEADRQSN GKACILTDTT RILRDLLSQV KSLRQENSTL QNESNYVTME RNELQDENGA  120
LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL  180
QQPLPQPTVI EPSARQPLEL KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI  240
SLGLPRMEDE QM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.92161e-165callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10KL8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g26210.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g26210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687040.0AK068704.1 Oryza sativa Japonica Group cDNA clone:J013159M16, full insert sequence.
GenBankAK0615150.0AK061515.1 Oryza sativa Japonica Group cDNA clone:006-309-H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015633302.10.0PREDICTED: transcription factor bHLH47
TrEMBLB8AQJ00.0B8AQJ0_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0NVT00.0A0A0E0NVT0_ORYRU; Uncharacterized protein
TrEMBLQ10KL80.0Q10KL8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGBGIOSGA012750-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-29bHLH family protein