PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g26210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 275aa    MW: 30319.2 Da    PI: 5.4678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g26210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.0001559108154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r++ ++erE+  R ++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  LOC_Os03g26210.1  59 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 108
                       678899*********************997....57788889999888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-956128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1156127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.26458108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGSFLVDWFS AGNGRGRFLE EAMVPSERGD VATAIRPAAA DKLVHGPISD KKCRKKVPRK  60
VHKSEREKLK RGHLNDLFGE LGNMLEADRQ SNGKACILTD TTRILRDLLS QVKSLRQENS  120
TLQNESNYVT MERNELQDEN GALRSEISDL QNELRMRATG SPGWGHGATG SPLPVPPSPG  180
TVFPSQQPMQ PSPMTTSTVF PLQQPLPQPT VIEPSARQPL ELKLFLEAPP AEDPEPSEDQ  240
EAPNNVARPQ PRYPTEASSW PISLGLPRME DEQM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.92161e-165callus| flower| leaf| panicle| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g26210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g26210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687040.0AK068704.1 Oryza sativa Japonica Group cDNA clone:J013159M16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015633302.10.0PREDICTED: transcription factor bHLH47
TrEMBLA0A0E0NVT00.0A0A0E0NVT0_ORYRU; Uncharacterized protein
TrEMBLB8AQJ00.0B8AQJ0_ORYSI; Putative uncharacterized protein
TrEMBLQ10KL80.0Q10KL8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os03g26210.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6793812
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-28bHLH family protein