PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g22170.1
Common NameLOC4332792, Os03g0341000, OSNPB_030341000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 244aa    MW: 26170.4 Da    PI: 6.5475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g22170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1966115255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g
  LOC_Os03g22170.1  66 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 115
                       69*******.**********843...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.91E-1665124No hitNo description
PfamPF008479.7E-1366115IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2266124IPR016177DNA-binding domain
SMARTSM003806.9E-3766129IPR001471AP2/ERF domain
PROSITE profilePS5103224.4666123IPR001471AP2/ERF domain
PRINTSPR003673.0E-116778IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3167124IPR001471AP2/ERF domain
PRINTSPR003673.0E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MCGGAIPLIS SRGPGGKRSL SAADELWPPP PQHASDDPAE QAAADEEEQE QQPAARRQRR  60
GERRTLYRGI RRRPWGKWAA EIRDPAKGAR VWLGTFATAE AAARAYDRAA RRIRGTKAKV  120
NFPNEDNAFA AAPPPYHLAA YYGDASSTSY LYPMAMTPAA AGLREQQLMT TTAVEYSVND  180
AVDVASVYFQ PPPPAVAYEF SAVGGGAVVV PVSAVAPAMT YGQSQEVAAP LMWNFDDITA  240
MPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-2367128668ATERF1
2gcc_A9e-2367128668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15873RRGERRTLYRGIRRRP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329966230.0
Expression AtlasQ10LN8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g22170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g22170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114140.0AK111414.1 Oryza sativa Japonica Group cDNA clone:002-182-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629983.11e-176PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427362e-35RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA2XGJ21e-176A2XGJ2_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0NUU61e-176A0A0E0NUU6_ORYRU; Uncharacterized protein
TrEMBLI1PB651e-176I1PB65_ORYGL; Uncharacterized protein
TrEMBLQ10LN81e-176Q10LN8_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os03g22170.11e-175(Oryza sativa Japonica Group)
STRINGBGIOSGA012597-PA1e-175(Oryza sativa Indica Group)
STRINGORGLA03G0161100.11e-175(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP169191010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-21ethylene-responsive element binding protein