PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g20550.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 201aa    MW: 22720.4 Da    PI: 8.4681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g20550.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.51.7e-202384259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                      +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k++++++ +dp +  +tY +eH+++
  LOC_Os03g20550.2 23 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 84
                      8***************************99999*******976538**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-231084IPR003657WRKY domain
SuperFamilySSF1182905.89E-221684IPR003657WRKY domain
PROSITE profilePS5081115.6861786IPR003657WRKY domain
SMARTSM007747.8E-312285IPR003657WRKY domain
PfamPF031065.7E-242383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MFLKKTCRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY KDNMNCPATK  60
QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL SPSEFQLQTA SGKAVSICFE SSGAQEPMTN  120
ASSPSSSAAR RSTPSENKNQ PLPRHSEAYS WGVGVVEQKP SCTELQSCST ECQDAFSAGT  180
IPEETVDAGR FGSIRFFHFL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.331310.0callus| flower| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g20550.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g20550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016530.0AK101653.1 Oryza sativa Japonica Group cDNA clone:J033057D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631650.11e-145PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A0D9Z6J31e-151A0A0D9Z6J3_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g20550.11e-145(Oryza sativa Japonica Group)
STRINGBGIOSGA012525-PA1e-145(Oryza sativa Indica Group)
STRINGORGLA03G0148400.11e-145(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-19WRKY DNA-binding protein 46