PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g20310.4
Common NameLOC4332660, Os03g0318600, OsJ_10635, OSNPB_030318600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 334aa    MW: 37069.9 Da    PI: 8.9412
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g20310.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-104878434
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                       k+ rr+++NReAAr+sR+RKka++++Le  
  LOC_Os03g20310.4 48 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 78
                      5899************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.2E-745108IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8754791IPR004827Basic-leucine zipper domain
PfamPF001701.3E-74979IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-75092No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-85191No hitNo description
PROSITE patternPS0003605267IPR004827Basic-leucine zipper domain
PfamPF141444.5E-33131206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MADASSRTDT STVLDTDDKN QMVDGQSGAI VPSNSSDRSD RSDKPMDQKV LRRLAQNREA  60
ARKSRLRKKA YVQQLESSKL KLASLEQEIN KARQQGIYIS SSGDQTHAMS GNGAMTFDLE  120
YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG  180
MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA  240
LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI  300
LTIRQAARAL LAIHDYFSRL RALSSLWLAR PRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.152380.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160116220.0
Expression AtlasQ6IVC3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g20310.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g20310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9911730.0HM991173.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 1 mRNA, complete cds.
GenBankAY6204140.0AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds.
GenBankAK2422570.0AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632465.10.0PREDICTED: transcription factor TGA2
RefseqXP_015632466.10.0PREDICTED: transcription factor TGA2
RefseqXP_015632467.10.0PREDICTED: transcription factor TGA2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D9Z6H10.0A0A0D9Z6H1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GLM70.0A0A0E0GLM7_ORYNI; Uncharacterized protein
TrEMBLB8AN010.0B8AN01_ORYSI; Putative uncharacterized protein
TrEMBLQ6IVC30.0Q6IVC3_ORYSJ; BZIP transcription factor
STRINGBGIOSGA010850-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g20310.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-138TGACG motif-binding factor 6