PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g19900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 491aa    MW: 52869.6 Da    PI: 7.3239
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g19900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-16294346156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g+
  LOC_Os03g19900.1 294 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 346
                       57****************988532...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-8134265IPR001471AP2/ERF domain
PROSITE profilePS5103212.774134259IPR001471AP2/ERF domain
PRINTSPR003675.4E-6135146IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-6231260IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-7232260IPR001471AP2/ERF domain
PRINTSPR003675.4E-6241261IPR001471AP2/ERF domain
PfamPF008475.8E-11294345IPR001471AP2/ERF domain
CDDcd000188.52E-12294355No hitNo description
SuperFamilySSF541713.86E-18294354IPR016177DNA-binding domain
SMARTSM003801.4E-32295359IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-19295353IPR001471AP2/ERF domain
PROSITE profilePS5103219.48295353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSPPTNGAIS LAFPPMGPLP ADALIYPFDG LSYDDFVLPV AAAPQHPLPV AVADPAPLLL  60
LPPPSSCTCN GASSGMGAVA PRTLALGATT DGSVMTPTSW GSDGGGGGSS SARAVRSPSP  120
VLPLVQGTGQ RTSCYRGVTR HRWTGRYEAH LWDNTCRREG QKRKGRQVTT PVELFLLSVL  180
VDWHLATNFC TLLDTLAELH SAVVPFFFLR KDYQWFHDSD TMTCCFFAFS GYDIEDKAAR  240
AYDLAALKYW GANATTNFPK ESYVKEIEEM QKMSKQELVA SLRRKSSGFS RGASIYRGVT  300
RHHQHGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDVAA LKFRGANAVT NFEPSRYNLE  360
AISQSDLPIS VSGRRHNSSS NSNNPAPEAG GQITLMSSPP ISQQSSSAPP YLIHNLLQFQ  420
PCGPPYAPPP PPPPPPPPPQ ALPLPGSYNF AEPVGFYWPY GDGEEQKVQL NSNMVGMASG  480
GFLHLANAAN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563140.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154526520.0
Expression AtlasQ10MD4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g19900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g19900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098390.0AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629274.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ5YGP86e-88PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLQ10MD40.0Q10MD4_ORYSJ; AP2 domain containing protein
STRINGLOC_Os03g19900.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.35e-87AINTEGUMENTA-like 6