PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g19120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 359aa    MW: 38768.1 Da    PI: 5.0777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g19120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrWTteEde+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  LOC_Os03g19120.1 14 RGRWTTEEDEKLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      8*******************************99************97 PP

2Myb_DNA-binding42.91.1e-1367139148
                       TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++ ++++++ lG++                          +W++Ia++++ gRt++++k++w+++l
  LOC_Os03g19120.1  67 RGNISNQEEDVIIKLHATLGNRksyvvkrmdyvclgardycfqqnthvRWSLIASHLP-GRTDNEIKNYWNSHL 139
                       788999****************************************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129421.437965IPR017930Myb domain
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
SuperFamilySSF466898.81E-211465IPR009057Homeodomain-like
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001674.59E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2065143IPR009057Homeodomain-like
SMARTSM007173.8E-1366141IPR001005SANT/Myb domain
PROSITE profilePS5129410.19266143IPR017930Myb domain
PfamPF002493.4E-1167139IPR001005SANT/Myb domain
CDDcd001672.42E-771139No hitNo description
SuperFamilySSF466898.81E-21111139IPR009057Homeodomain-like
PfamPF066402.5E-82157358IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTTE EDEKLAGYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAGVKRGNI SNQEEDVIIK LHATLGNRKS YVVKRMDYVC LGARDYCFQQ NTHVRWSLIA  120
SHLPGRTDNE IKNYWNSHLS RQIHTYRRTY TAPSEAAVTI DVTKLQAAGK RRGGRTAGQS  180
RKGDKKRAED DPPKETAAAD TPLPESSPRR AQSDEARSGS VVVDPEEPSS QPNNGSSGGG  240
GGTPDGPCSE ETATGPTSLD PMEMGLWEVE SEFAEMEALL CGGVAPDGPG IPGLEPLDVA  300
AQADDLLDMD WDGFAADLWG DPAQRGGLVQ DAGEPNGSMG CSSDELESFA SWLLSDSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-19121455110B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10MM2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g19120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g19120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1372670.0AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAF4741410.0AF474141.1 Oryza sativa typical A-type R2R3 Myb protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629329.10.0PREDICTED: myb-related protein P-like
SwissprotP278982e-87MYBP_MAIZE; Myb-related protein P
TrEMBLQ10MM20.0Q10MM2_ORYSJ; P protein C-terminus containing protein
STRINGLOC_Os03g19120.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-62myb domain protein 12