PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g18950.1
Common NameOs03g0301500, OsJ_010105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 458aa    MW: 48549.2 Da    PI: 6.1284
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g18950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.6e-13384407226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ + r G C+yG+rC+FaHg
  LOC_Os03g18950.1 384 KTELCNKWER-GACPYGARCRFAHG 407
                       8*********.*************9 PP

2zf-CCCH18.43.8e-06420446127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt +C+ fa+   C+yG rC+F H+p
  LOC_Os03g18950.1 420 YKTLPCQMFAAASGCPYGHRCHFRHSP 446
                       9***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-16378414IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8382408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8382413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079382409IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10384407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-10415446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7416445IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4419446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746419447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MKLGISGGAG EAMEGELSFV SPARSSCFSF EGGGSGSPTW VSTVEALLRS PTSSVSDGGG  60
GGGGGYNSPA RASSPLQKQI PYCRDAGDFS SLTWASTLEK PLESPSSCIS DGRGGGFGSP  120
TSAFPPEKLL ISPPTCVSDN RGVGNVGGFP SLPWASSLER LLTSPSSCVS DSRGVGNADG  180
FPSLPWASSL EKPLTSPSSC VSDGRSGGYS SPLGASAERE REVREAEMLL RAIAERYDDC  240
FLRLRDAAAE LSDLHRERLR LAAENLHLSL LLEELESEQR KQASAMAPPK LEEDEAAQGG  300
APKSISIRSP GYLSQKPPQG QARPQRLRVR ASQAMEISHP NCLIFVMGNQ CSPKEAAAAG  360
DEEDEEDKGG GEVEVEAYRQ GAAKTELCNK WERGACPYGA RCRFAHGLQE LRPVIRHPRY  420
KTLPCQMFAA ASGCPYGHRC HFRHSPLRAA AAESFCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-173844461174Tristetraproline
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10MN8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g18950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g18950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1372670.0AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAC1186680.0AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689864.11e-141PREDICTED: putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0GEB60.0A0A0E0GEB6_ORYNI; Uncharacterized protein
STRINGLOC_Os03g18950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-32C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]