PlantTFDB - Plant Transcription Factor Databases @ CBI, PKU
PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information? help Back to Top
TF ID LOC_Os03g17150.1
Common NameLOC4332436, Os03g0279700, OSNPB_030279700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 192aa    MW: 19708.4 Da    PI: 7.0992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g17150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  LOC_Os03g17150.1 51 FECKTCNRQFPSFQALGGHRASH 73
                      89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.67E-849116No hitNo description
PROSITE profilePS501579.8275178IPR007087Zinc finger, C2H2
SMARTSM003550.165173IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-125175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139124.2E-993118IPR007087Zinc finger, C2H2
SMARTSM003552.594116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAASPPERM FECKTCNRQF  60
PSFQALGGHR ASHKKPRLAD GDPAAEAPAK PKVHGCSICG LEFAVGQALG GHMRRHRAVM  120
ADGLGLGLSL GLGIGVVGQS DDDGGKKKAA AAAAAAELVF DLNAPAIEEE PDRARPAGLA  180
VEFPVVVDFP C*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10N75
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g17150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g17150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK1113380.0AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.11e-134PREDICTED: zinc finger protein ZAT7
TrEMBLA0A0E0FLU71e-134A0A0E0FLU7_ORYNI; Uncharacterized protein
TrEMBLA2XF721e-134A2XF72_ORYSI; Putative uncharacterized protein
TrEMBLQ10N751e-134Q10N75_ORYSJ; Os03g0279700 protein
STRINGBGIOSGA010987-PA1e-134(Oryza sativa Indica Group)
STRINGLOC_Os03g17150.11e-134(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-26C2H2 family protein